PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA031219-PA
Common NameOsI_32291
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family Nin-like
Protein Properties Length: 871aa    MW: 95795.7 Da    PI: 6.7023
Description Nin-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA031219-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1RWP-RK91.65.7e-29556606252
            RWP-RK   2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 
                       ek++sl++l++yF++++kdAAk+Lgvc+T+LKriCRq+GI+RWP+Rkik++
  BGIOSGA031219-PA 556 EKTVSLQVLRQYFAGSLKDAAKSLGVCPTTLKRICRQHGINRWPSRKIKKV 606
                       799**********************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5151917.734545626IPR003035RWP-RK domain
PfamPF020421.0E-25558606IPR003035RWP-RK domain
SuperFamilySSF542779.81E-21763859No hitNo description
Gene3DG3DSA:3.10.20.2401.3E-24773854No hitNo description
PROSITE profilePS5174518.47773856IPR000270PB1 domain
SMARTSM006661.6E-18773856IPR000270PB1 domain
CDDcd064071.02E-43774854No hitNo description
PfamPF005641.6E-15774854IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 871 aa     Download sequence    Send to blast
MESPISTPPL IPSMRLCSHQ CDSEGNLTCM EEGDPQPSIS LARTPSEGAA AAVDLDLLEQ  60
LLSADNAWLE VAANTSRSPN FFATPSNCLT DASVATTTPA NSWWIQPSGA STSVRERFDQ  120
ALAYIRETQR DADVLVQLWV PVKGNDGQLV LTTSGQPFTL DQRSNSLIQF REVSTKYQFS  180
ADVASGSSPG LPGRVFIGRL PEWSPDVRYF TSYEYPRISH AQYLDVHGTM GLPVFERGNY  240
SCLGVIELIM TKQKLNFTSE LNTICSALQA VNLTSTEVSS IPRTKLNSAS YKDALPEILE  300
VLRAACITHK LPLAQTWVTC AQQGKRGSRH SDENYKYCIS TIDAACYVNE PRMQSFHEAC  360
SEHHLLRGQG VAGKAFTTNQ PCFLPDIGSS TKLEYPLSHH AKIFNLKGAV AIRLRCTRTG  420
IADFVLEFFL PTDCEVLEEQ KAVLDSLSGT MRSVCQTLRV VTDKEMEDEA MREMNELNSF  480
SPRGKNKVEE LSFGDNTRGD REEASWTTLV GTSQKGSDLA ELHTHGMLSH GGHGSSQAGD  540
QTSKEGSKVK RRTKTEKTVS LQVLRQYFAG SLKDAAKSLG VCPTTLKRIC RQHGINRWPS  600
RKIKKVDHSL RKLQQIIDSV HGAETAFQLN TLYKDLTNTS VSSDNNLSGS VTVPLANQNN  660
LDFEMHQHHR LSSNIPSTSL SHSSCSQSSD SSPSCSGGAT KHSPQVGADQ VRSGCLPQHS  720
PVQTLQTEAA SINEHFSGQE APIDLLQDVA EKANGEQHMS QSPSSPKQTA NVGMRVKVTF  780
GSEKVRFRLK PECDFQELKQ EISKRLSIAD MNSLIVKYLD DDSEWVLMTC DADLHECFHV  840
YKLADIQTIK ISVHLAASPT TRITIGHTGF S
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.715630.0callus| flower| panicle| stem
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0056790.0AP005679.2 Oryza sativa Japonica Group genomic DNA, chromosome 9, BAC clone:OJ1210_A07.
GenBankAP0149650.0AP014965.1 Oryza sativa Japonica Group DNA, chromosome 9, cultivar: Nipponbare, complete sequence.
GenBankCP0126170.0CP012617.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 9 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015612116.10.0protein NLP1-like isoform X2
RefseqXP_015612117.10.0protein NLP1-like isoform X2
RefseqXP_025875998.10.0protein NLP1-like isoform X2
TrEMBLB8BE530.0B8BE53_ORYSI; Uncharacterized protein
STRINGOBART09G18730.20.0(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP55543852
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76350.10.0Nin-like family protein