PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa

Family

HB-other

Protein Properties

Length: 201aa MW: 21484.6 Da PI: 4.8381

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
BGIOSGA031128-PA	genome	RIS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	27.1	7.1e-09	31	71	4	44
-SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHH CS Homeobox 4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqV 44 + +f++eq++ Le++F+ + ++ +++ +LA++lgL+ rq BGIOSGA031128-PA 31 KKRFSEEQIKSLESMFATQTKLEPRQKLQLARELGLQPRQL 71 456***********************************995 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	6.4E-11	14	71	IPR009057	Homeodomain-like
SuperFamily	SSF46689	1.37E-7	18	71	IPR009057	Homeodomain-like
CDD	cd00086	4.53E-7	30	70	No hit	No description
Pfam	PF00046	2.6E-6	31	71	IPR001356	Homeobox domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 201 aa Download sequence Send to blast
MDGEEDSEWM MMDVGGKGGK GGGGGGAADR KKRFSEEQIK SLESMFATQT KLEPRQKLQL 60 ARELGLQPRQ LEKLAEMLQE PRGKYGDNAG DDARSGGVAG MKKEEFVGAG GAATLYSSAE 120 GGGTTTTTTA KLMPHFGSDD VDAGLFLRPS SQHHPPPPHA GAGFTSSEPA ADHQSFNFHS 180 SWPSSTEQTC SSTPWWEFES E

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	17	25	GGKGGGGGG

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Os.100310	0.0	callus\| flower\| leaf\| panicle\| root\| seed\| stem

Expression -- Microarray ? help Back to Top
Source	ID	E-value
GEO	117239983	0.0

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in seedlings, roots, leaves, nodes, internodes, flowers and embryo. {ECO:0000269\|PubMed:10732669, ECO:0000269\|PubMed:17999151}.
Uniprot	TISSUE SPECIFICITY: Expressed in seedlings, roots, leaves, nodes, internodes, flowers and embryo. {ECO:0000269\|PubMed:10732669, ECO:0000269\|PubMed:17999151}.

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that binds to the DNA sequence 5'-CAAT[AT]ATTG-3'. {ECO:0000269\|PubMed:10732669}.
UniProt	Probable transcription factor that binds to the DNA sequence 5'-CAAT[AT]ATTG-3'. {ECO:0000269\|PubMed:10732669}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK059755	0.0	AK059755.1 Oryza sativa Japonica Group cDNA clone:006-203-C03, full insert sequence.
GenBank	AK103160	0.0	AK103160.1 Oryza sativa Japonica Group cDNA clone:J033121C04, full insert sequence.
GenBank	AP005681	0.0	AP005681.3 Oryza sativa Japonica Group genomic DNA, chromosome 9, BAC clone:OJ1439_F07.
GenBank	AP014965	0.0	AP014965.1 Oryza sativa Japonica Group DNA, chromosome 9, cultivar: Nipponbare, complete sequence.
GenBank	CP012617	0.0	CP012617.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 9 sequence.
GenBank	CT830847	0.0	CT830847.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN030P03, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015612316.1	1e-111	homeobox-leucine zipper protein HOX6
Swissprot	Q651Z5	1e-112	HOX6_ORYSJ; Homeobox-leucine zipper protein HOX6
Swissprot	Q9XH35	1e-112	HOX6_ORYSI; Homeobox-leucine zipper protein HOX6
TrEMBL	A0A0E0B5L6	1e-144	A0A0E0B5L6_9ORYZ; Uncharacterized protein
TrEMBL	A0A0E0QU55	1e-144	A0A0E0QU55_ORYRU; Uncharacterized protein
TrEMBL	B8BDS8	1e-144	B8BDS8_ORYSI; Uncharacterized protein
TrEMBL	B9G4P2	1e-144	B9G4P2_ORYSJ; Uncharacterized protein
STRING	OGLUM09G17780.1	1e-145	(Oryza glumipatula)
STRING	ORUFI09G18560.1	1e-145	(Oryza rufipogon)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP7873	34	48

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G46680.2	3e-15	homeobox 7

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]