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Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
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| TF ID |
BGIOSGA031055-PA |
| Common Name | OsI_31965 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
|
| Family |
SBP |
| Protein Properties |
Length: 492aa MW: 52059 Da PI: 8.2942 |
| Description |
SBP family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| BGIOSGA031055-PA | genome | RIS | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | SBP | 48.2 | 2.9e-15 | 171 | 205 | 44 | 78 |
TTTSSEEETTT--SS--S-STTTT-------S--- CS
SBP 44 qqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78
q rfh l efDe+krsCr+rL++hn+rrrk+qa
BGIOSGA031055-PA 171 FQHIRFHLLGEFDEAKRSCRKRLDGHNRRRRKPQA 205
5778****************************986 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 492 aa
Download sequence Send
to blast |
MDWDLKMPVS WDLAELEHNA VPNMAAAASA AEPGIAAVAA SRGAPGRPEC SVDLKLGGLG 60
EFGAADALKE PAAAAKAPVS SAAAAASVAK VPPSTSTLKR PRGGGGGGGG QCPSCAVDGC 120
KGRPEQAPRL PPAAQSVRAA LQDARRRRRR PRDALLPAVQ QLQNLRVKME FQHIRFHLLG 180
EFDEAKRSCR KRLDGHNRRR RKPQADSMSS GSFMTSQQGT RFASFTPPRP EPSWPGIIKS 240
EETPYYSHHH HPHPVMTSRQ PHFVGSPSSA TTAAFSPKEG RRFPFLHEGD QISFGGGGGA 300
AAAATLEISV CQTTVVAPPP PESSSSNKMF SSDGLTMATT TTTTAHHHHH HHQVLDSDCA 360
LSLLSSPANS SSVDVSRMVQ PSTAAAAGAE HHHHHHHHHH HQIPMAQPLV PNLQQQFGGS 420
SPWFASSPAA AAVAGGGFAC PSMDSEQQQQ QQLNAVLVPG SNENEMNYHG MFHVGGEGSS 480
DGTSPSLPFS WQ
|
| Nucleic Localization
Signal ? help
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 |
| No. |
Start |
End |
Sequence |
| 1 | 144 | 151 | RRRRRRPR |
| 2 | 185 | 202 | KRSCRKRLDGHNRRRRKP |
| Expression --
Description ? help
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| Source |
Description |
| Uniprot | TISSUE SPECIFICITY: Expressed in young panicles. {ECO:0000269|PubMed:16861571}. |
| Functional Description ? help
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| Source |
Description |
| UniProt | Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May be involved in panicle development. {ECO:0000250}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: Negatively regulated by microRNAs miR156b and miR156h. {ECO:0000305|PubMed:16861571}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | CP012617 | 0.0 | CP012617.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 9 sequence. |
