PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa

Family

WRKY

Protein Properties

Length: 361aa MW: 37914.2 Da PI: 6.5076

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
BGIOSGA030535-PA	genome	RIS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	84	1.4e-26	125	185	1	58
---SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnh 58 +dDg++WrKYGqKe+ g+++pr+YYrCt++ gC+++k+v+r++ed v++++Y+geH++ BGIOSGA030535-PA 125 VDDGHSWRKYGQKEILGAKHPRGYYRCTHRhsqGCMATKQVQRTDEDAMVFDVIYHGEHTC 185 59*************************98999***********************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	4.4E-27	114	186	IPR003657	WRKY domain
PROSITE profile	PS50811	21.884	120	183	IPR003657	WRKY domain
SuperFamily	SSF118290	1.57E-24	121	185	IPR003657	WRKY domain
SMART	SM00774	3.4E-39	125	187	IPR003657	WRKY domain
Pfam	PF03106	3.8E-26	126	185	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0010200	Biological Process	response to chitin
GO:0048527	Biological Process	lateral root development
GO:0005730	Cellular Component	nucleolus
GO:0000987	Molecular Function	core promoter proximal region sequence-specific DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 361 aa Download sequence Send to blast
MESMEGNGGG RLVVTELSHI KELVRQLEGH LGGSGSPDLC KHLASQIFSV TERSIGMIRS 60 GHFDGHRKRS AAAVAAGDLD SATPSPLSDV SDLPFKATKK RKTSTEKKRH QIRVSSTGGV 120 ENPPVDDGHS WRKYGQKEIL GAKHPRGYYR CTHRHSQGCM ATKQVQRTDE DAMVFDVIYH 180 GEHTCVHKAV AAGAGKPETE TDTNAAAESR LHELSSGLTV KIEGLTAPPQ QQQGGGGWNA 240 MPPFCLSSPV SGLAPPDQHN PFSAPSTPEN RLAAAASSAA SPATSDSMAA APFHQAAAAG 300 GDAAWRDAEL QEVVSALVAA TTATATAQPA PATAMVDADL SALDAFEFDP GFTIDITSFF 360 A

Sequence ? help Back to Top

Protein Sequence Length: 361 aa Download sequence Send to blast

MESMEGNGGG RLVVTELSHI KELVRQLEGH LGGSGSPDLC KHLASQIFSV TERSIGMIRS  60
GHFDGHRKRS AAAVAAGDLD SATPSPLSDV SDLPFKATKK RKTSTEKKRH QIRVSSTGGV  120
ENPPVDDGHS WRKYGQKEIL GAKHPRGYYR CTHRHSQGCM ATKQVQRTDE DAMVFDVIYH  180
GEHTCVHKAV AAGAGKPETE TDTNAAAESR LHELSSGLTV KIEGLTAPPQ QQQGGGGWNA  240
MPPFCLSSPV SGLAPPDQHN PFSAPSTPEN RLAAAASSAA SPATSDSMAA APFHQAAAAG  300
GDAAWRDAEL QEVVSALVAA TTATATAQPA PATAMVDADL SALDAFEFDP GFTIDITSFF  360
A

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6ir8_A	2e-22	125	185	8	68	OsWRKY45
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Os.27227	0.0	flower\| leaf\| panicle\| root\| seed\| stem

Expression -- Microarray ? help Back to Top
Source	ID	E-value
GEO	32975283	0.0

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00112	ampDAP	Transfer from AT2G46400	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AY676930	0.0	AY676930.1 Oryza sativa (indica cultivar-group) transcription factor WRKY74 (WRKY74) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015651250.1	0.0	probable WRKY transcription factor 30
TrEMBL	Q6IEK7	0.0	Q6IEK7_ORYSI; WRKY transcription factor 74
STRING	ONIVA09G05410.1	0.0	(Oryza nivara)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1086	38	131

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G46400.1	2e-32	WRKY DNA-binding protein 46

Publications ? help Back to Top
Zhang ZL, et al. A rice WRKY gene encodes a transcriptional repressor of the gibberellin signaling pathway in aleurone cells. Plant Physiol., 2004. 134(4): p. 1500-13 [PMID:15047897]