PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA030473-PA
Common NameOsI_30788
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family G2-like
Protein Properties Length: 183aa    MW: 20244.1 Da    PI: 8.0925
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA030473-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like301.1e-091203655
           G2-like 36 mkvkgLtlehvkSHLQkYRl 55
                      m+vkgLtl h+kSHLQkYRl
  BGIOSGA030473-PA  1 MGVKGLTLFHLKSHLQKYRL 20
                      99*****************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.7E-8121IPR009057Homeodomain-like
PfamPF143796.9E-2261106IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 183 aa     Download sequence    Send to blast
MGVKGLTLFH LKSHLQKYRL GKQSGKEASE QSKDASYLLD AQGGMSVSPR VSTQDVKENQ  60
EVKEALRAQM EMQRRLHEQV EVQKHVQIRM EAYQKYIDTL LEKACKIVSE QLASSGFSIS  120
DNDLPELSGG VMCGSADTLS SSIFHQLSVS PINLHSPEGK PTPSGIEGQM ILQKSPELKR  180
KSC
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.64300.0callus| flower| leaf| panicle| seed| stem| vegetative meristem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329793600.0
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator (PubMed:26586833). Acts redundantly with PHR1 as a key component of the central regulatory system controlling transcriptional responses to Pi starvation (PubMed:26586833). Binds in a sequence-specific manner to phosphate starvation-regulated promoters (PubMed:26586833). {ECO:0000269|PubMed:26586833}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated in roots by low Pi. {ECO:0000269|PubMed:26586833}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0693360.0AK069336.1 Oryza sativa Japonica Group cDNA clone:J023010K22, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015611986.11e-131protein PHR1-LIKE 2
SwissprotQ94A573e-39PHL2_ARATH; Protein PHR1-LIKE 2
TrEMBLA2YZK61e-131A2YZK6_ORYSI; Uncharacterized protein
TrEMBLI1QMR91e-130I1QMR9_ORYGL; Uncharacterized protein
STRINGORGLA09G0034800.11e-131(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP34273873
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24120.11e-41G2-like family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]