PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA030048-PA
Common NameOsI_30766
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family NAC
Protein Properties Length: 500aa    MW: 52824.5 Da    PI: 6.551
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA030048-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM67.63.4e-21171528125
               NAM   8 hPtdeelvveyLkkkvegkklelee.........vikevdiykvePwdLpk.....kvkaeekewyfFskrdkkyatgkrknratk..sgyWk 84 
                       hPt++el++ yL++++  ++++ +          +i+++d y ++P dL +     +++ +++ wyfFs+ ++++++g+r+ ra++  +g W+
  BGIOSGA030048-PA  17 HPTEQELISSYLHPRLLLTTTKPAAavaaggvpsFIHHADAYAADPADLTArhlpaRAADGSRAWYFFSPVRTTTERGTRRARAVEsgDGCWH 109
                       9**************88877333234566777768**************84466666666888********************87744788** PP

               NAM  85 atgkdkevlskkgelvglkktLvfykgrapkge..ktdWvmhe 125
                       +    ++v+++ g+ vg ++ + f k+r+++g+  +t W+m e
  BGIOSGA030048-PA 110 SESGVRAVVDAAGRRVGHRQFFSFVKKREEDGKrvRTGWLMVE 152
                       *************************99999887558*****98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100528.67110176IPR003441NAC domain
PfamPF023656.9E-1217152IPR003441NAC domain
SuperFamilySSF1019411.26E-3017176IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 500 aa     Download sequence    Send to blast
MADADADACP AVFASRHPTE QELISSYLHP RLLLTTTKPA AAVAAGGVPS FIHHADAYAA  60
DPADLTARHL PARAADGSRA WYFFSPVRTT TERGTRRARA VESGDGCWHS ESGVRAVVDA  120
AGRRVGHRQF FSFVKKREED GKRVRTGWLM VELGVDNDAA SSSSSNELVL CKIYMTPRMP  180
PPSPPSAVTS SAAATMELMP RAPPPSAPSA VTSPAVTTME LMAGGVHKRR KISDEIAAAA  240
TPPHPQQQRR QRCVPDNDGS KESSGESSYV VILDDDDDDA DAPEDGGAVR SKLRSDDGVM  300
LADARDDEQH AATSDSMAGT SGGAVTGGGH GKLLPDLNVV ATVAHDDEGR HARGAPRPQD  360
GGTSTTTTMV ASADAERGST TGHLPAATAG YRRTLMLFLE EEDDDAVEDE QQQQQAPPLP  420
PATSTATTTT RTAAEANVQR QRQPPCCTFV VHPCAAHAKM RHGAAYGCGC RVTGAVRRGG  480
YHLPRRAVHT TTTTTTTTGQ
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.547780.0panicle
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329919500.0
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126170.0CP012617.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 9 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015611524.10.0PH domain leucine-rich repeat protein phosphatase 1
TrEMBLA2YZI20.0A2YZI2_ORYSI; Uncharacterized protein
STRINGONIVA09G04490.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1745799