PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa

Family

HD-ZIP

Protein Properties

Length: 260aa MW: 27903.7 Da PI: 4.5348

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
BGIOSGA029853-PA	genome	RIS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	60.3	3e-19	23	76	4	56
-SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 4 RttftkeqleeLeelFek.nrypsaeereeLAkklgLterqVkvWFqNrRakek 56 ++++t+eq+++Le+ Fe+ +r++ e++ eLA++lg+ rqV vWFqNrRa++k BGIOSGA029853-PA 23 KRRLTAEQVRALERSFEEeKRKLEPERKSELARRLGIAPRQVAVWFQNRRARWK 76 4579***********98********************************9 PP
2	HD-ZIP_I/II	122.6	1.9e-39	22	112	2	91
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeee.kLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 +krrl++eqv++LE+sFeee+ kLeperK+elar+Lg+ prqvavWFqnrRAR+ktkqlE d+++L++a+d+l + +++L +++e+Lr+++ BGIOSGA029853-PA 22 RKRRLTAEQVRALERSFEEEKrKLEPERKSELARRLGIAPRQVAVWFQNRRARWKTKQLELDFDRLRAAHDELLAGRAALAADNESLRSQV 112 8***************9999****************************************************************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50071	17.556	17	78	IPR001356	Homeobox domain
SuperFamily	SSF46689	1.35E-17	18	80	IPR009057	Homeodomain-like
SMART	SM00389	1.8E-16	20	82	IPR001356	Homeobox domain
CDD	cd00086	1.18E-16	22	79	No hit	No description
Pfam	PF00046	1.4E-16	23	76	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	3.1E-19	27	77	IPR009057	Homeodomain-like
PRINTS	PR00031	2.5E-6	49	58	IPR000047	Helix-turn-helix motif
PROSITE pattern	PS00027	0	53	76	IPR017970	Homeobox, conserved site
PRINTS	PR00031	2.5E-6	58	74	IPR000047	Helix-turn-helix motif
Pfam	PF02183	1.5E-11	78	120	IPR003106	Leucine zipper, homeobox-associated

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 260 aa Download sequence Send to blast
MEDLVDELYG VDEQGSSSAA ARKRRLTAEQ VRALERSFEE EKRKLEPERK SELARRLGIA 60 PRQVAVWFQN RRARWKTKQL ELDFDRLRAA HDELLAGRAA LAADNESLRS QVILLTEKLQ 120 ANGKSPSPSP APAEQTAVPA APESAKSFQL EEGRCLYDAA GSTTTTNGGG GGVAMPAARV 180 AAARAASNDS PESYFAGARS PPSSSEDDCG GAGSDDDYPS SSVLLPVDAT LVGDAFEHAV 240 AATVAADEEA PLNSWEWFWN

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	70	78	RRARWKTKQ

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Os.52806	0.0	leaf

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in roots, leaf sheaths and blades and panicles. {ECO:0000269\|PubMed:17999151}.

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	CP012617	0.0	CP012617.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 9 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015610704.1	0.0	homeobox-leucine zipper protein HOX25
Swissprot	A2Z0Q0	0.0	HOX25_ORYSI; Homeobox-leucine zipper protein HOX25
TrEMBL	C7J6K3	0.0	C7J6K3_ORYSJ; Os09g0379600 protein
STRING	ORUFI09G09080.1	0.0	(Oryza rufipogon)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP12756	27	35

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G01470.1	1e-30	homeobox 1

Publications ? help Back to Top
Agalou A, et al. A genome-wide survey of HD-Zip genes in rice and analysis of drought-responsive family members. Plant Mol. Biol., 2008. 66(1-2): p. 87-103 [PMID:17999151]