PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA029765-PA
Common NameOsI_31360
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family ZF-HD
Protein Properties Length: 212aa    MW: 22047.6 Da    PI: 4.6074
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA029765-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer106.31.9e-333994458
       ZF-HD_dimer  4 vrYkeClkNhAaslGghavDGCgEfmpsegee.gtaaalkCaACgCHRnFHRreve 58
                      ++Y+eClkNhAaslGgha+DGCgEfmps+ ++ +++++l+CaACgCHRnFHRr +e
  BGIOSGA029765-PA 39 TVYRECLKNHAASLGGHALDGCGEFMPSPAANpADPTSLRCAACGCHRNFHRRLPE 94
                      78*****************************99********************876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF047704.4E-283992IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257748.0E-244191IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015666.0E-314191IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152327.7524192IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Sequence ? help Back to Top
Protein Sequence    Length: 212 aa     Download sequence    Send to blast
MEAMDVKYKP LVFPNGAIKK AAKPAAVAPA VGGGGGGETV YRECLKNHAA SLGGHALDGC  60
GEFMPSPAAN PADPTSLRCA ACGCHRNFHR RLPEGSPPPP PPPALLPAPP MPPHRGEETP  120
EVRLPGVDGD ESDSDSDGSE YDDERSVSPP PPPLAAAVAH QAYYPSAPHM LLSLGSSGQA  180
QRLPPQEEEV VIDGMEYEEG DAFCRAGWGL AS
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.1008271e-152panicle
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329795241e-152
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126170.0CP012617.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 9 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015610599.11e-128zinc-finger homeodomain protein 9
SwissprotQ6ER211e-129ZHD9_ORYSJ; Zinc-finger homeodomain protein 9
TrEMBLA2Z1831e-149A2Z183_ORYSI; Uncharacterized protein
STRINGONIVA09G09830.11e-128(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP36463374
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69600.12e-28zinc finger homeodomain 1