PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

BGIOSGA029665-PA

Common Name

HOX11, OsI_030534

Organism

Oryza sativa subsp. indica

Taxonomic ID

39946

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa

Family

HD-ZIP

Protein Properties

Length: 276aa MW: 28789.8 Da PI: 7.0882

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
BGIOSGA029665-PA	genome	RIS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	56.4	5e-18	89	143	2	56
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ +++keq Lee F+++++++ +++ LAk+l+L rqV vWFqNrRa+ k BGIOSGA029665-PA 89 RKKLRLSKEQSAFLEESFKEHSTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTK 143 788899***********************************************98 PP
2	HD-ZIP_I/II	127.8	4.5e-41	89	179	1	92
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 +kk+rlskeq+++LEesF+e+++L+p++K +la++L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lkr++++l+een+rL+ke +eLr +lk BGIOSGA029665-PA 89 RKKLRLSKEQSAFLEESFKEHSTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCETLTEENRRLQKELAELR-ALK 179 69*************************************************************************************9.555 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	5.3E-18	74	139	IPR009057	Homeodomain-like
SuperFamily	SSF46689	1.21E-18	77	146	IPR009057	Homeodomain-like
PROSITE profile	PS50071	17.07	85	145	IPR001356	Homeobox domain
SMART	SM00389	1.1E-15	87	149	IPR001356	Homeobox domain
Pfam	PF00046	1.6E-15	89	143	IPR001356	Homeobox domain
CDD	cd00086	1.36E-16	89	146	No hit	No description
PROSITE pattern	PS00027	0	120	143	IPR017970	Homeobox, conserved site
Pfam	PF02183	9.5E-11	145	179	IPR003106	Leucine zipper, homeobox-associated
SMART	SM00340	1.4E-24	145	188	IPR003106	Leucine zipper, homeobox-associated

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 276 aa Download sequence Send to blast
MVDGHLEAST RGFDVNRPPS SGGGGGAEEE QDDVAGAALS SSPNNSAGSF PMDDFSGHGL 60 GGNDAAPGGG GGDRSCSRAS DEDDGGSARK KLRLSKEQSA FLEESFKEHS TLNPKQKLAL 120 AKQLNLRPRQ VEVWFQNRRA RTKLKQTEVD CEYLKRCCET LTEENRRLQK ELAELRALKT 180 VHPFYMHLPA TTLSMCPSCE RVASNSAPAT ASSAATSSTA APPAAPSSGG IAATSSSSAA 240 AAAAPDHRPS SFAALFSSPR GFPLSVAPQA QPPTSS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	137	145	RRARTKLKQ

Expression -- Microarray ? help Back to Top
Source	ID	E-value
GEO	148283384	0.0

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in stems, leaf sheaths and blades and panicles. {ECO:0000269\|PubMed:17999151}.

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	CP012617	0.0	CP012617.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 9 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015611029.1	1e-147	homeobox-leucine zipper protein HOX11
Swissprot	A2Z1U1	0.0	HOX11_ORYSI; Homeobox-leucine zipper protein HOX11
TrEMBL	A0A0E0IKT6	0.0	A0A0E0IKT6_ORYNI; Uncharacterized protein
STRING	ONIVA09G13320.1	0.0	(Oryza nivara)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP5209	33	63

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G06710.1	1e-63	homeobox from Arabidopsis thaliana

Publications ? help Back to Top
Agalou A, et al. A genome-wide survey of HD-Zip genes in rice and analysis of drought-responsive family members. Plant Mol. Biol., 2008. 66(1-2): p. 87-103 [PMID:17999151]