PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA029071-PA
Common NameOsI_30060
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family ERF
Protein Properties Length: 842aa    MW: 92287.4 Da    PI: 7.902
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA029071-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.42e-19663712255
               AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                       +y+GVr+++ +g+W+AeIrdp+    + +r++lg+f+tae+Aa+a++aa+ +++g
  BGIOSGA029071-PA 663 RYRGVRQRP-WGKWAAEIRDPV----KaARVWLGTFDTAEDAARAYDAAAVRFKG 712
                       7********.**********64....55**********************99877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF102502.8E-5289396IPR019378GDP-fucose protein O-fucosyltransferase
CDDcd112993.09E-11089402No hitNo description
PROSITE profilePS5103225.198663720IPR001471AP2/ERF domain
SuperFamilySSF541716.34E-22663722IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.106.3E-32663721IPR001471AP2/ERF domain
SMARTSM003801.4E-35663726IPR001471AP2/ERF domain
PfamPF008474.9E-12663711IPR001471AP2/ERF domain
PRINTSPR003672.3E-11664675IPR001471AP2/ERF domain
CDDcd000181.62E-12671721No hitNo description
PRINTSPR003672.3E-11686702IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 842 aa     Download sequence    Send to blast
MSSSASPAAW WARSRVRILL PVIFLAPALY FLLSPPSSPP FFFTLPTSRE ESPSASGSRV  60
IWAQRRVAEW RSCGWWRAAM PAPSRRNGYI RIDCYGGLNQ LRRDLCDGIA VARLLNATMV  120
LPKFEVAAYW NESSGFADVF DVDYFIEQTR GYVEVVKDMP EEIASKEPFK VDCSKRKGHF  180
DYVETVLPAL LEHQYISLTP AMSQRRDRNH SYAKASYCQG CYNALRLNKN VETKAIELLQ  240
AIPKPFLSLH LRFEPDMVAY SRCVYTGLSS KSLSAIEAAR GEDRKALTGE AALLWRNRGK  300
CPLTPSETAF ILKALGIPTD TNIYLAAGDG LMELEGFTSI YKNIYTKSSL LTHDDFEKMH  360
GNTKAALDYY VSVSSDAYVA TFFGNMDKMV TAMRTMQGHQ KTLVLSRRAY ANYTAVGLSG  420
EQLAMAMWDA HREEYIMGRG SALPEQCFCE FKLIFRCANM DENFTAIESN ADDKEETVLG  480
EMGFHSQHGG WALWREAGSR TEMHLGPPSV SPAYCFDFSC SSASSAIKGT RVDRLREASD  540
TGHHRGRHKR ARSSPRHDDE PPPPPPLSPA VTGAHGGAAW HSTVLAEDVE SAVIVAALTH  600
VISSTAAEVT TAVPPVTVAP QLAATATMFG QQVMQQPPRG FPPLPSSSGS AATAPEQQQP  660
RRRYRGVRQR PWGKWAAEIR DPVKAARVWL GTFDTAEDAA RAYDAAAVRF KGSKAKVNFP  720
DEVAGASIAA VQLPRHHQHH PPTSLPPLPV PAHLRPHFSL AGGQSTTPAP AAAAVAAPPR  780
EEFPDLSSYA HILQSGDLEY DFHAAVSAGL TTTAGRSSSS SSLSMPPPSE DLDYKPPFGP  840
SN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A9e-22664723363ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A9e-22664723666ATERF1
3gcc_A9e-22664723666ATERF1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.73290.0callus| leaf| panicle| root| seed| stem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO379890480.0
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1194250.0AK119425.1 Oryza sativa Japonica Group cDNA clone:001-132-H07, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015650097.10.0O-fucosyltransferase 13 isoform X1
RefseqXP_015650099.10.0O-fucosyltransferase 13 isoform X1
RefseqXP_015650100.10.0O-fucosyltransferase 13 isoform X1
RefseqXP_015650101.10.0O-fucosyltransferase 13 isoform X1
RefseqXP_015650102.10.0O-fucosyltransferase 13 isoform X1
RefseqXP_015650103.10.0O-fucosyltransferase 13 isoform X1
TrEMBLB8B9520.0B8B952_ORYSI; Uncharacterized protein
STRINGOS08T0537900-010.0(Oryza sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP736466
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13330.11e-16related to AP2 6l