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Plant Transcription
Factor Database
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Transcription Factor Information
|
Basic
Information? help
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| TF ID |
BGIOSGA029051-PA |
| Common Name | OsI_30018 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
|
| Family |
SBP |
| Protein Properties |
Length: 415aa MW: 42075.7 Da PI: 6.6713 |
| Description |
SBP family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| BGIOSGA029051-PA | genome | RIS | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | SBP | 49.4 | 1.2e-15 | 124 | 154 | 48 | 78 |
SEEETTT--SS--S-STTTT-------S--- CS
SBP 48 rfhelsefDeekrsCrrrLakhnerrrkkqa 78
rfh l+efDe+krsCr+rL++hn+rrrk+q+
BGIOSGA029051-PA 124 RFHLLQEFDEAKRSCRKRLDGHNRRRRKPQP 154
9***************************987 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 415 aa
Download sequence Send
to blast |
MEWDLKMPPA ASWELADELE NSGGGGVPAA VSSSSAAVGG GVNAGGGGRQ ECSVDLQLGG 60
LGEFGGGGAQ PRVAVAGELA QGKGPAAAAT GAAAAASSAP AKRPRGKGLC SPTTSSPFTP 120
LFLRFHLLQE FDEAKRSCRK RLDGHNRRRR KPQPDPMNSA SYLASQQGAR FSPFATPRPE 180
ASWTGMIKTE ESPYYTHHQI PLGISSRQQH FVGSTSDGGR RFPFLQEGEI SFGNGAGAGG 240
VPMDQAAAAA AASVCQPLLK TVAPPPPPHG GGGSGGGKMF SDGGLTQVLD SDCALSLLSA 300
PANSTAIDVG GGRVVVQPTE HIPIAQPLIS GLQFGGGGGS SAWFAARPHH QAATGAAATA 360
VVVSTAGFSC PVVESEQLNT VLSSNDNEMN YNGMFHVGGE GSSDGTSSSL PFSWQ
|
| Nucleic Localization
Signal ? help
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 |
| No. |
Start |
End |
Sequence |
| 1 | 134 | 151 | KRSCRKRLDGHNRRRRKP |
| Expression --
Description ? help
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| Source |
Description |
| Uniprot | TISSUE SPECIFICITY: Expressed in young panicles. {ECO:0000269|PubMed:16861571}. |
| Functional Description ? help
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| Source |
Description |
| UniProt | Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May be involved in panicle development. {ECO:0000250}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: Negatively regulated by microRNAs miR156b and miR156h. {ECO:0000305|PubMed:16861571}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AK109469 | 0.0 | AK109469.1 Oryza sativa Japonica Group cDNA clone:001-128-D02, full insert sequence. |
| Publications
? help Back to Top |
- Kikuchi S, et al.
Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
Science, 2003. 301(5631): p. 376-9
[PMID:12869764] - Wang SS,Wang CS,Tseng TH,Hou YL,Chen KY
High-resolution genetic mapping and candidate gene identification of the SLP1 locus that controls glume development in rice.
Theor. Appl. Genet., 2011. 122(8): p. 1489-96
[PMID:21327937] - Wang S, et al.
Control of grain size, shape and quality by OsSPL16 in rice.
Nat. Genet., 2012. 44(8): p. 950-4
[PMID:22729225] - Wang S, et al.
The OsSPL16-GW7 regulatory module determines grain shape and simultaneously improves rice yield and grain quality.
Nat. Genet., 2015. 47(8): p. 949-54
[PMID:26147620] - Wang Y, et al.
A comprehensive meta-analysis of plant morphology, yield, stay-green, and virus disease resistance QTL in maize (Zea mays L.).
Planta, 2016. 243(2): p. 459-71
[PMID:26474992] - Lee CM, et al.
Influence of Multi-Gene Allele Combinations on Grain Size of Rice and Development of a Regression Equation Model to Predict Grain Parameters.
Rice (N Y), 2015. 8(1): p. 33
[PMID:26519289] - Bessho-Uehara K, et al.
Loss of function at RAE2, a previously unidentified EPFL, is required for awnlessness in cultivated Asian rice.
Proc. Natl. Acad. Sci. U.S.A., 2016. 113(32): p. 8969-74
[PMID:27466405]
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