PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA028963-PA
Common NameOsI_29809
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family bHLH
Protein Properties Length: 403aa    MW: 41949.4 Da    PI: 7.3432
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA028963-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH413.4e-13334379655
                       HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
               HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                       +++Er RR ri +++ +L+el+P+     +k  + a++L +Av+YIk+Lq
  BGIOSGA028963-PA 334 SIAERVRRTRISERIRKLQELVPNM----DKQTNTADMLDLAVDYIKDLQ 379
                       689*********************7....688*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.281328378IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474596.67E-16331388IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.34E-13332383No hitNo description
Gene3DG3DSA:4.10.280.103.2E-15333390IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.3E-10334379IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.4E-13334384IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048573Biological Processphotoperiodism, flowering
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 403 aa     Download sequence    Send to blast
MYGSPVSKDL NLPVQPPAMS SSGLLRYRSA PSTLLAEFCD DFLPPAAAPR AASPDADNVF  60
SRFLADHQIR DKSPPANGDA DGDAAAHFPD DPTMATQHHH QQQMMFQHHP QQMASGEGLY  120
RTVSSTGIDA ATAAANAAGG GGGGLLRQSS SPAGFLNHLN MDNGYGSMLR AGMAAAGGGG  180
GVGFRNGANA AAAADSPGGS GGRLKGQLSF SSRQGSLMSQ ISEMDSEELG GSSPEGAGGG  240
GGGGGRGYLS GYPMSSGWEE SSLMSDTNIS GVKRQRDSSE PSQNGGGGGG GLAHQFSLPK  300
TSSEMAAIEK FLQFQDAVPC KIRAKRGCAT HPRSIAERVR RTRISERIRK LQELVPNMDK  360
QTNTADMLDL AVDYIKDLQK QVKGLNDSRA NCTCSAKHQQ YSG
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.53110.0callus| flower| leaf| panicle| root| seed| stem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329853150.0
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00646PBMTransfer from LOC_Os08g39630Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1001060.0AK100106.1 Oryza sativa Japonica Group cDNA clone:J023004M08, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015650699.10.0transcription factor bHLH130
TrEMBLA2YWU40.0A2YWU4_ORYSI; Uncharacterized protein
STRINGONIVA08G22410.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP188438103
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42280.17e-45bHLH family protein