PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

BGIOSGA028889-PA

Common Name

OsI_29692

Organism

Oryza sativa subsp. indica

Taxonomic ID

39946

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa

Family

Dof

Protein Properties

Length: 341aa MW: 36070.2 Da PI: 10.077

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
BGIOSGA028889-PA	genome	RIS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	119	1.8e-37	124	182	4	62
zf-Dof 4 kalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 + +cprC+s++tkfCyynny++sqPr+fCk CrryWtkGG+lrnvPvGgg+rk+ +ss BGIOSGA028889-PA 124 EGDPCPRCESRDTKFCYYNNYNTSQPRHFCKCCRRYWTKGGTLRNVPVGGGTRKKSSSS 182 5678**************************************************99876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	5.0E-26	125	177	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.286	126	180	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	6.4E-31	127	180	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	128	164	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 341 aa Download sequence Send to blast
MYRSGESVPR VTTFVVTATA TIRDSRFRQP PTTRSTICLP PLLGSSRLHR RARAEGPEQP 60 RRRRACRSSS RRPAAGRRSS SPPLDLRRPK GYAAAPATPQ PGSAATAAAA AGPAATAAAA 120 AAGEGDPCPR CESRDTKFCY YNNYNTSQPR HFCKCCRRYW TKGGTLRNVP VGGGTRKKSS 180 SSSSSSSSSS AAAAAPAAKR QKTSKKRRVT TPEPLAATTP VLTEAAADSA AKTTTEATSE 240 KKTTTSTTTT TPPAPDTTSE ITTELVVPAV EEDSFTDLLQ PDSAAVTLGL DFSDYPSITK 300 SLADPDLHFE WPPPAFDMAS YWPAGAGFAD PDPTAVFLNL P

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Os.58835	0.0	callus\| flower\| leaf\| panicle\| root\| seed\| stem

Expression -- Microarray ? help Back to Top
Source	ID	E-value
GEO	116010729	0.0

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in all tissues examined.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence at the MNF1-binding site.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	CP012616	0.0	CP012616.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 8 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015650493.1	1e-138	dof zinc finger protein MNB1A
Swissprot	P38564	2e-63	MNB1A_MAIZE; Dof zinc finger protein MNB1A
TrEMBL	B8BC12	0.0	B8BC12_ORYSI; Uncharacterized protein
STRING	ORUFI08G21040.1	1e-137	(Oryza rufipogon)
STRING	OS08T0490100-01	1e-137	(Oryza sativa)
STRING	ONIVA08G20810.1	1e-137	(Oryza nivara)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP140	37	367

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G51700.1	5e-28	DOF zinc finger protein 1

Publications ? help Back to Top
Yanagisawa S,Izui K Molecular cloning of two DNA-binding proteins of maize that are structurally different but interact with the same sequence motif. J. Biol. Chem., 1993. 268(21): p. 16028-36 [PMID:8340424]