PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA028884-PA
Common NameOsI_29678
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family bHLH
Protein Properties Length: 365aa    MW: 38422 Da    PI: 6.5145
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA028884-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH292e-09185233355
                       HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
               HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                        +h+ +Er RR++i +++  L++l+P +    sk   Ka +L + ++Y++sLq
  BGIOSGA028884-PA 185 NNHSLAERLRREKISERMKLLQDLVPGC----SKVTGKALMLDEIINYVQSLQ 233
                       58*************************9....556*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474594.84E-17179250IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.09E-11180237No hitNo description
PROSITE profilePS5088815.459182232IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.6E-16184250IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000108.5E-7185233IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.6E-10188238IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 365 aa     Download sequence    Send to blast
MDANGGNGFG VESNASAVHG GMAMAWQWHG GQMSGGSSCA AAPPPVQQPA MDSLAWSSTV  60
SPSTGAATAA SGAGFLLPPA AVRGGFGSFP VNSGGIVEPA GDCSSESKKR RSDEIAGTDH  120
ANASNALADS GNETECSKDV NGEVIGPPAT AAAGGKSKGK GAKDAGEAQK EGYSHVRARK  180
GQATNNHSLA ERLRREKISE RMKLLQDLVP GCSKVTGKAL MLDEIINYVQ SLQRQVEFLS  240
MKLSAVNPRI DLDIESLVNN SKDVLRFPGQ PSSAPMGFSF STEMMPGLQL SRPGILQGGV  300
HGMINPDVFT SLMQKQQQND KGAFREPQMH QTLDGSFRNT AQMPYPQVMS SEELSIRQDQ  360
DGFHM
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.606780.0panicle
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0045570.0AP004557.3 Oryza sativa Japonica Group genomic DNA, chromosome 8, PAC clone:P0028A08.
GenBankAP0149640.0AP014964.1 Oryza sativa Japonica Group DNA, chromosome 8, cultivar: Nipponbare, complete sequence.
GenBankCP0126160.0CP012616.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 8 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015650276.10.0transcription factor bHLH79
TrEMBLA0A0E0QKH80.0A0A0E0QKH8_ORYRU; Uncharacterized protein
TrEMBLA2YWG50.0A2YWG5_ORYSI; Uncharacterized protein
TrEMBLQ6ZCV80.0Q6ZCV8_ORYSJ; BHLH transcription factor-like
STRINGORUFI08G20920.10.0(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP29093785
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26260.31e-46cryptochrome-interacting basic-helix-loop-helix 5