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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
BGIOSGA028870-PA |
Common Name | OsI_29653 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family |
Trihelix |
Protein Properties |
Length: 312aa MW: 34461.6 Da PI: 10.6442 |
Description |
Trihelix family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
BGIOSGA028870-PA | genome | RIS | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | trihelix | 27.1 | 1.1e-08 | 53 | 110 | 26 | 86 |
trihelix 26 lkkplWe.evskkmrergf..erspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86
+ + +W +v++++++ g ++ +qC++k+e+l+kry+ + ++ s +pyf+++e
BGIOSGA028870-PA 53 SSGRRWPpHVAARCAASGAalRKHGQQCRHKLEQLRKRYRIEGARPVT------SLWPYFRRME 110
55666743799999777654499****************988776664......68*******8 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 312 aa
Download sequence Send
to blast |
MAAQTRSGAR DHAAGRNGRR RLSHPPRPPP RALSSTLRGT VDEAAPGASS RRSSGRRWPP 60 HVAARCAASG AALRKHGQQC RHKLEQLRKR YRIEGARPVT SLWPYFRRME RFERGPLPVS 120 SAFPPPPPAA SPPAAASDDD DDDEEDDEEE EEVEEPIPRN NTRSINGILR DSGGGGGGFS 180 GFAPRPPPQQ PPPSFAMLST APPRKRVPYE AFQAKVAMAD KVKEEEPPPV ATRPGGGTNE 240 QLSAVLRDFG QGIMRLERRR MEMQWEIDRG WKETEARHNR MLLDAQRHLH EALAATPPPL 300 KKARREHGGD GS
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Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | CP012616 | 0.0 | CP012616.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 8 sequence. |