PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA028820-PA
Common NameOsI_29533
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family GeBP
Protein Properties Length: 454aa    MW: 48661.5 Da    PI: 10.5125
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA028820-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF573100.12e-31188287298
            DUF573   2 lfqrlwseeDeivlLqGlidfkaktgk..spsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkk.aksgkepsfskehdqkifel 91 
                       ++ r+w+ +De+++L++li+++ak+g+   +s+d+ ++++++++++s+k+s++ql++K+rrLK+K++   ++ +ksg++p++ +ehd++++el
  BGIOSGA028820-PA 188 RPPRVWNPQDEVTILRALISYRAKNGAlpGSSQDTGKLHNMIRGQLSVKASTTQLSDKVRRLKHKYNLILTRvTKSGRDPDLPTEHDREVYEL 280
                       578************************888999*************************************99899****************** PP

            DUF573  92 skkiWgs 98 
                       skk+Wg+
  BGIOSGA028820-PA 281 SKKVWGT 287
                       *****95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045049.4E-28190286IPR007592Protein of unknown function DUF573
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005730Cellular Componentnucleolus
Sequence ? help Back to Top
Protein Sequence    Length: 454 aa     Download sequence    Send to blast
MAPKRPAAAS GSASEASDGE AGGAGRRRSP SRSRSPSRSA SPSRSRSKTP PHNAAVLSST  60
PASAAVDFVA ASDSDAGADA DARLASPRRS RERSPRLHSD SDNSAAATAE AAEAAAAAAF  120
DDGDDEGNAT PPPRSRRSSR VEATGVKPIS SRPMDASRRP AAASSQSQRR SKRPRSSPTQ  180
HSPEQHKRPP RVWNPQDEVT ILRALISYRA KNGALPGSSQ DTGKLHNMIR GQLSVKASTT  240
QLSDKVRRLK HKYNLILTRV TKSGRDPDLP TEHDREVYEL SKKVWGTKSG GAGAGSGGGG  300
GGGGGRVYEN AEVVQSDEEQ WSRDDSDEDM ESGWDDRDHR NRRLKAIVVA NGNGNAVTGG  360
RSVHGNGSGK GDVADKGKDM YPYLWEAVEE LSKEHPSGTA FRKAFGVLDG SRARAMEEKL  420
NRFRLSEIRQ QLRRMDLMKE TIKMVLDALE GSDL
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.805260.0callus| panicle
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0045850.0AP004585.2 Oryza sativa Japonica Group genomic DNA, chromosome 8, PAC clone:P0470B03.
GenBankAP0064610.0AP006461.3 Oryza sativa Japonica Group genomic DNA, chromosome 8, PAC clone:P0104B02.
GenBankAP0149640.0AP014964.1 Oryza sativa Japonica Group DNA, chromosome 8, cultivar: Nipponbare, complete sequence.
GenBankCP0126160.0CP012616.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 8 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015648426.10.0STOREKEEPER protein
TrEMBLA0A0E0ID510.0A0A0E0ID51_ORYNI; Uncharacterized protein
TrEMBLA2YW250.0A2YW25_ORYSI; Uncharacterized protein
STRINGONIVA08G19420.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP26713587
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00390.11e-14DNA-binding storekeeper protein-related transcriptional regulator