PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA028751-PA
Common NameOsI_29392
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family AP2
Protein Properties Length: 421aa    MW: 45746.1 Da    PI: 5.3283
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA028751-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP246.96.7e-1557116256
               AP2   2 gykGVrwdkkrgrWvAeIrd.pseng...kr.krfslgkfgtaeeAakaaiaarkklege 56 
                        ++GV++++++gr++A+++d  ++n    k+ ++++lg ++ +e Aa+a++ a++k++g+
  BGIOSGA028751-PA  57 AFRGVTRHRWTGRFEAHLWDkNTWNEsqsKKgRQVYLGAYDGEEAAARAYDLAALKYWGH 116
                       58******************777777777557*************************997 PP
2AP248.13e-15158209155
               AP2   1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                       s+y+GV +++ +g+W+A+I   +   g +k+ +lg++ t eeAa a++ a+ + +g
  BGIOSGA028751-PA 158 SKYRGVARHHHNGKWEARIGRvF---G-NKYLYLGTYATQEEAAVAYDIAAIEHRG 209
                       89****99**********99966...3.6**********************99887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541711.77E-1656125IPR016177DNA-binding domain
SMARTSM003801.5E-2657129IPR001471AP2/ERF domain
PROSITE profilePS5103220.03357123IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.2E-1557124IPR001471AP2/ERF domain
PRINTSPR003676.4E-55869IPR001471AP2/ERF domain
PfamPF008472.7E-1258116IPR001471AP2/ERF domain
PRINTSPR003676.4E-5105125IPR001471AP2/ERF domain
CDDcd000181.47E-22158219No hitNo description
SuperFamilySSF541712.68E-17158219IPR016177DNA-binding domain
PfamPF008476.9E-10158208IPR001471AP2/ERF domain
SMARTSM003803.8E-25159223IPR001471AP2/ERF domain
PROSITE profilePS5103217.728159217IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.1E-17159217IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 421 aa     Download sequence    Send to blast
MAKRRSNGET AAASSDDSSS GVCGGGGGGS GEVEPRRRQK RPRRSAPRDC PSQRSSAFRG  60
VTRHRWTGRF EAHLWDKNTW NESQSKKGRQ VYLGAYDGEE AAARAYDLAA LKYWGHDTVL  120
NFPLSTYDEE LKEMEGQSRE EYIGSLRRKS SGFSRGVSKY RGVARHHHNG KWEARIGRVF  180
GNKYLYLGTY ATQEEAAVAY DIAAIEHRGL NAVTNFDINL YIRWYHGSCR SSSAAAATTI  240
EDDDFAEAIA AALQGVDEQP SSSPATTRQL QTADDDDDDL VAQLPPQLRP LARAASTSPI  300
GLLLRSPKFK EIIEQAAAAA ASSSGSSSSS STDSPSSSSS SSLSPSPLPS PPPQQQPTVP  360
KDDQYNVDMS SVAAARCSFP DDVQTYFGLD DDGFGYPEVD TFLFGDLGAY AAPMFQFELD  420
V
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.547860.0flower| leaf| panicle
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329919780.0
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1067690.0AK106769.1 Oryza sativa Japonica Group cDNA clone:002-115-F07, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015651011.10.0AP2-like ethylene-responsive transcription factor At1g79700
TrEMBLB8BB420.0B8BB42_ORYSI; Uncharacterized protein
STRINGORGLA08G0142100.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP33193678
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G79700.21e-93AP2 family protein