PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa

Family

MYB

Protein Properties

Length: 225aa MW: 25124.7 Da PI: 10.2225

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
BGIOSGA028729-PA	genome	RIS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	56.9	4.9e-18	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd+ lv +v+++G+g+W++++ g+ R+ k+c++rw +yl BGIOSGA028729-PA 14 KGPWTPEEDLMLVAYVQEHGPGNWRAVPTNTGLMRCSKSCRLRWTNYL 61 79********************************************97 PP
2	Myb_DNA-binding	52.1	1.5e-16	67	112	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg++T +E++l+v++ ++lG++ W++Ia++++ Rt++++k++w+++l BGIOSGA028729-PA 67 RGNFTDQEEKLIVHLQALLGNR-WAAIASYLP-ERTDNDIKNYWNTHL 112 89******************.*****.**********996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	8.2E-25	5	64	IPR009057	Homeodomain-like
PROSITE profile	PS51294	25.434	9	65	IPR017930	Myb domain
SuperFamily	SSF46689	1.08E-30	12	108	IPR009057	Homeodomain-like
SMART	SM00717	4.5E-14	13	63	IPR001005	SANT/Myb domain
Pfam	PF00249	1.2E-16	14	61	IPR001005	SANT/Myb domain
CDD	cd00167	1.20E-10	16	61	No hit	No description
Gene3D	G3DSA:1.10.10.60	1.1E-24	65	117	IPR009057	Homeodomain-like
PROSITE profile	PS51294	20.427	66	116	IPR017930	Myb domain
SMART	SM00717	4.3E-16	66	114	IPR001005	SANT/Myb domain
Pfam	PF00249	3.1E-15	67	112	IPR001005	SANT/Myb domain
CDD	cd00167	2.27E-10	69	112	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 225 aa Download sequence Send to blast
MGRPPCCVKA EVKKGPWTPE EDLMLVAYVQ EHGPGNWRAV PTNTGLMRCS KSCRLRWTNY 60 LRPGIKRGNF TDQEEKLIVH LQALLGNRWA AIASYLPERT DNDIKNYWNT HLKKKLKKMQ 120 AGQGDGGDDG GGAGALEGGD DAGGRAGAGA GKRPAVPKGQ WERRLQTDIH TARQALRDAL 180 SLXXXXXXXX XXXXXXXXXK RKKMDCCRVA LDPLLKFLLS WMLVQ

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1h8a_C	5e-27	11	116	24	128	MYB TRANSFORMING PROTEIN
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Os.59496	0.0	leaf\| panicle

Expression -- Microarray ? help Back to Top
Source	ID	E-value
GEO	116631422	0.0

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in germinating seeds, rosette and cauline leaves, flower buds, open flowers, stems and developing siliques. {ECO:0000269\|PubMed:25305760}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator involved in the activation of cuticular wax biosynthesis under drought stress. Binds directly to the promoters of genes involved in cuticular wax biosynthesis. Transactivates WSD1, KCS2/DAISY, CER1, CER2, FAR3 and ECR genes (PubMed:25305760, PubMed:27577115). Functions together with MYB96 in the activation of cuticular wax biosynthesis (PubMed:27577115). {ECO:0000269\|PubMed:25305760, ECO:0000269\|PubMed:27577115}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by salt stress, osmotic shock and abscisic acid (ABA). {ECO:0000269\|PubMed:25305760}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	CT837778	0.0	CT837778.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSA023K22, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015648957.1	1e-100	myb-related protein 306
Swissprot	Q9SN78	1e-89	MYB94_ARATH; Transcription factor MYB94
TrEMBL	A0A0N7KPX1	1e-100	A0A0N7KPX1_ORYSJ; Os08g0437300 protein (Fragment)
STRING	Pavir.Bb02186.1.p	1e-101	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP229	38	296

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G47600.1	5e-88	myb domain protein 94

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Cui F, et al. Dissecting Abscisic Acid Signaling Pathways Involved in Cuticle Formation. Mol Plant, 2016. 9(6): p. 926-38 [PMID:27060495] Lee SB,Kim HU,Suh MC MYB94 and MYB96 Additively Activate Cuticular Wax Biosynthesis in Arabidopsis. Plant Cell Physiol., 2016. 57(11): p. 2300-2311 [PMID:27577115]