PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

BGIOSGA028683-PA

Common Name

OsI_29270

Organism

Oryza sativa subsp. indica

Taxonomic ID

39946

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa

Family

FAR1

Protein Properties

Length: 457aa MW: 52665.6 Da PI: 8.7834

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
BGIOSGA028683-PA	genome	RIS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	64.6	2.7e-20	24	110	2	89
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHel 89 f+ +Y+ ++GF+vrk+ ++ sk++g++t+ ++vC +eg+r++++++ + +r ra tr++Cka++++++++ g++ev+++ leHnH+l BGIOSGA028683-PA 24 FWVAYGGRTGFDVRKRCTNVSKMDGKVTSCRYVCFNEGHRTKRQTE-HVTRCFRADTRIDCKAQMVISLDRgAGNYEVIDV-LEHNHPL 110 99***************************************999.9999****************9***97.89*99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	4.8E-16	24	110	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 457 aa Download sequence Send to blast
MAEVDTKLLE VGLRFKNPYK GWLFWVAYGG RTGFDVRKRC TNVSKMDGKV TSCRYVCFNE 60 GHRTKRQTEH VTRCFRADTR IDCKAQMVIS LDRGAGNYEV IDVLEHNHPL HLPETFHLMK 120 SQRKISKLQA FEIETADDSS IRPKAAHKLA TRQVGGPLNL SYSCRDRQNY LQSRRQRELA 180 FGQNAVKHLS PVKGKEEDEG EEEDEGEEES HVRFLGVRST QLSESFNNAL KNHLKSDFDI 240 IRFLKHFERS VQEKRDKELQ SEFEARKKLP RRLMCTPMLV RANQVYTPVI FEAFQSEYER 300 SMAACARVLD GEHRYAVVVG NLLGELEKKF NLLSAGGTHE PYEDKENIDP NAQHGDDLLS 360 AIQLNKKEVQ SNKSRRIRTW IDKLRKGKRN NPKSTKPTKK KGVKKNDALQ PQVQVKDDGS 420 HKEIDVELQQ YNIISDFTHL VTAPSCDDDI LCDQDLF

Sequence ? help Back to Top

Protein Sequence Length: 457 aa Download sequence Send to blast

MAEVDTKLLE VGLRFKNPYK GWLFWVAYGG RTGFDVRKRC TNVSKMDGKV TSCRYVCFNE  60
GHRTKRQTEH VTRCFRADTR IDCKAQMVIS LDRGAGNYEV IDVLEHNHPL HLPETFHLMK  120
SQRKISKLQA FEIETADDSS IRPKAAHKLA TRQVGGPLNL SYSCRDRQNY LQSRRQRELA  180
FGQNAVKHLS PVKGKEEDEG EEEDEGEEES HVRFLGVRST QLSESFNNAL KNHLKSDFDI  240
IRFLKHFERS VQEKRDKELQ SEFEARKKLP RRLMCTPMLV RANQVYTPVI FEAFQSEYER  300
SMAACARVLD GEHRYAVVVG NLLGELEKKF NLLSAGGTHE PYEDKENIDP NAQHGDDLLS  360
AIQLNKKEVQ SNKSRRIRTW IDKLRKGKRN NPKSTKPTKK KGVKKNDALQ PQVQVKDDGS  420
HKEIDVELQQ YNIISDFTHL VTAPSCDDDI LCDQDLF

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	CP012616	0.0	CP012616.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 8 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015688484.1	1e-113	PREDICTED: protein FAR1-RELATED SEQUENCE 5-like
TrEMBL	A2YVB0	0.0	A2YVB0_ORYSI; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP18	32	967

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	4e-14	FAR1-related sequence 5