PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA028630-PA
Common NameOsI_29160
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family LBD
Protein Properties Length: 453aa    MW: 48316 Da    PI: 4.421
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA028630-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260125.13.4e-3984182199
            DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkae 93 
                       aCaaCk++rrkC++dC++apyfpa+q+++f n+h+lFG+sn+lk+l++l++e  +dam++l+y+Ae+ra+dPv G+++vi +l++qle   ae
  BGIOSGA028630-PA  84 ACAACKYQRRKCNPDCPMAPYFPADQQRRFLNAHRLFGVSNILKTLRHLKPELCDDAMRTLIYQAEMRAHDPVGGCCRVICDLERQLELDTAE 176
                       7******************************************************************************************** PP

            DUF260  94 lallke 99 
                       l+++ +
  BGIOSGA028630-PA 177 LNTVLH 182
                       *98866 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089123.01783184IPR004883Lateral organ boundaries, LOB
PfamPF031952.1E-3784180IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 453 aa     Download sequence    Send to blast
MTSTTTTNTT TTTTNNNNNP VSTTTTTTAS HQRQSLPVAA RPPHSSGSGS GSGGSHRGAS  60
GGGSGGGGGG GGGGGGGGGG TNQACAACKY QRRKCNPDCP MAPYFPADQQ RRFLNAHRLF  120
GVSNILKTLR HLKPELCDDA MRTLIYQAEM RAHDPVGGCC RVICDLERQL ELDTAELNTV  180
LHHLAMCRQA AAAGASGSVA ATLPAGVLDD ACADLDVTSS NQPLLLSAEH EVVDALYANQ  240
EADAAILHAD GHHNQDESQR EHHHGQPQQL YDYFYYDSTA GDDVSSKPNL DINVDGMQHF  300
DFDTNYDAEH KVELTSDHQM PVGVDEHNQI DDKGFEIKSG PSLVDVFDLR QEEEQVQTVD  360
VNTDIEVKEM VDMNADIDVK TMVDENSNID IIKTMVDVNA DIVDVVKTVV DVNGDIGVKE  420
ELPELENGKI IAGDATQMAE SSHCILGLGV SSF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A2e-26802047127LOB family transfactor Ramosa2.1
5ly0_B2e-26802047127LOB family transfactor Ramosa2.1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16380SGGGGGGGGGGGGGGGGT
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.715370.0flower| panicle
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO1160136020.0
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126160.0CP012616.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 8 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025883262.10.0uncharacterized protein LOC9266602
TrEMBLA2YV110.0A2YV11_ORYSI; Uncharacterized protein
STRINGONIVA08G14880.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP52283461
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13850.15e-37LOB domain-containing protein 22