PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | BGIOSGA028423-PA | ||||||||
Common Name | OsI_28713 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | C2H2 | ||||||||
Protein Properties | Length: 82aa MW: 8489.75 Da PI: 11.0585 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 16.8 | 2e-05 | 24 | 46 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC+ Cg+sFs+ L H +H BGIOSGA028423-PA 24 FKCSVCGRSFSSYQALGGHKTSH 46 89**********99999888877 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 1.64E-6 | 23 | 51 | No hit | No description |
SMART | SM00355 | 0.0081 | 24 | 46 | IPR015880 | Zinc finger, C2H2-like |
Gene3D | G3DSA:3.30.160.60 | 3.3E-4 | 24 | 46 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE profile | PS50157 | 11.78 | 24 | 51 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 6.3E-13 | 24 | 47 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 26 | 46 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 82 aa Download sequence Send to blast |
MLALGGHHRV QAPPPLSAPV GAEFKCSVCG RSFSSYQALG GHKTSHRFKL PTPPASPVLA 60 PASSEVQSPL AFSPRNSAAA RI |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Os.7912 | 3e-62 | callus| flower| leaf| panicle| root| stem |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: During germination, abundant up to fourteen hours after imbibition. Levels decrease slightly after this and then gradually increase again. {ECO:0000269|PubMed:8223628}. | |||||
Uniprot | TISSUE SPECIFICITY: Highest levels in the root apex of wheat seedlings, lowest levels in leaf proximal region. {ECO:0000269|PubMed:8223628}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Potential transcription factor which binds the nonamer motif 5'-CATCCAACG-3'. Possibly involved in regulating transcription of the histone H3 and H4 genes. {ECO:0000269|PubMed:8223628}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CP012616 | 1e-137 | CP012616.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 8 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015649250.1 | 2e-52 | zinc finger protein 1, partial | ||||
Swissprot | Q42430 | 5e-21 | ZFP1_WHEAT; Zinc finger protein 1 | ||||
TrEMBL | A0A0E0I9Z0 | 3e-50 | A0A0E0I9Z0_ORYNI; Uncharacterized protein | ||||
TrEMBL | B8B9I5 | 2e-50 | B8B9I5_ORYSI; Uncharacterized protein | ||||
TrEMBL | I1QHE8 | 5e-50 | I1QHE8_ORYGL; Uncharacterized protein | ||||
TrEMBL | Q6UU08 | 5e-50 | Q6UU08_ORYSJ; Putative zinc finger transcription factor | ||||
STRING | ONIVA08G10560.1 | 5e-51 | (Oryza nivara) | ||||
STRING | ORGLA08G0084900.1 | 8e-51 | (Oryza glaberrima) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1022 | 36 | 113 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G67450.1 | 3e-11 | zinc-finger protein 1 |