PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA028419-PA
Common NameOsI_28701
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family M-type_MADS
Protein Properties Length: 184aa    MW: 20133 Da    PI: 9.2906
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA028419-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF53.92.2e-17953145
                      S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS
            SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45
                      k+i n   r v fskRr+ ++KKA+ELS+LC+++vav ++s+ gk
  BGIOSGA028419-PA  9 KPIANRKARDVCFSKRRQVVIKKANELSILCGVNVAVAVLSPAGK 53
                      6899**************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.2E-22160IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.31E-21175IPR002100Transcription factor, MADS-box
PROSITE profilePS5006620.983161IPR002100Transcription factor, MADS-box
CDDcd001201.78E-22258No hitNo description
PRINTSPR004042.4E-14323IPR002100Transcription factor, MADS-box
PfamPF003192.5E-191156IPR002100Transcription factor, MADS-box
PRINTSPR004042.4E-142338IPR002100Transcription factor, MADS-box
PRINTSPR004042.4E-143859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 184 aa     Download sequence    Send to blast
MRRGKVKIKP IANRKARDVC FSKRRQVVIK KANELSILCG VNVAVAVLSP AGKPFFFGCP  60
TVQAVTRRLL GVGPSNPTMG DGGNGDETDI VHELNLKYQK LQQENEVEKK KNQRGQDVRL  120
ASDVNALGLH ELEAFDSNFN VIDDIVDSND VVKNAKQTAE PQTQMSVAST LQFMLDGQSI  180
APSL
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.549230.0panicle
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329923210.0
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0044580.0AP004458.2 Oryza sativa Japonica Group genomic DNA, chromosome 8, PAC clone:P0045D08.
GenBankAP0058190.0AP005819.2 Oryza sativa Japonica Group genomic DNA, chromosome 8, BAC clone:OSJNBa0063H21.
GenBankAP0090790.0AP009079.1 Oryza sativa Indica Group DNA, chromosome 8, BAC clone: K0031E03.
GenBankAP0090810.0AP009081.1 Oryza sativa Indica Group DNA, chromosome 8, BAC clone: K0048F05.
GenBankAP0149640.0AP014964.1 Oryza sativa Japonica Group DNA, chromosome 8, cultivar: Nipponbare, complete sequence.
GenBankAY3603940.0AY360394.1 Oryza sativa (japonica cultivar-group) chromosome 8 BAC OSJNBa0070J19, complete sequence.
GenBankCP0126160.0CP012616.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 8 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA2YTQ11e-132A2YTQ1_ORYSI; Uncharacterized protein
STRINGORUFI08G11050.31e-130(Oryza rufipogon)
STRINGONIVA04G01430.11e-132(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP2310166
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34440.17e-20AGAMOUS-like 29