PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA028102-PA
Common NameOsI_28071
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family HD-ZIP
Protein Properties Length: 765aa    MW: 82321.7 Da    PI: 5.1043
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA028102-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox35.22e-11101141141
                       TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-H CS
          Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLte 41 
                       +++ +++t++q++e+e++F+++++p+ ++r+eL+++lgL+ 
  BGIOSGA028102-PA 101 KKRYHRHTQHQIQEMEAFFKECPHPDDKQRKELSRELGLEP 141
                       688999*********************************86 PP
2START2083.7e-652805001206
                       HHHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEE CS
             START   1 elaeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....kae 80 
                       ela +a++elv++a+++ep+W++ss      ++++e+ + f+++ +      ++ea+r  +vv+m++ +lve+l+d++ q+ + +     +a+
  BGIOSGA028102-PA 280 ELAVAAMDELVQMAQLDEPLWSSSSepaaALLDEEEYARMFPRGLGpkqygLKSEASRHGAVVIMTHSNLVEILMDVN-QFATVFSsivsRAS 371
                       57899********************99999999********99888999*****************************.88888888888*** PP

                       EEEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEE CS
             START  81 tlevissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtw 166
                       t+ev+s+g      galq+m++e+q++splvp R+++fvRy++  ++g+w++vdvS+ds ++ p    v +++++pSg+li++++ng+skvtw
  BGIOSGA028102-PA 372 THEVLSTGvagnynGALQVMSMEFQVPSPLVPtRESYFVRYCKNNSDGTWAVVDVSLDSLRPSP----VQKCRRRPSGCLIQEMPNGYSKVTW 460
                       **************************************************************99....79999******************** PP

                       EE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
             START 167 vehvdlkgrlphwllrslvksglaegaktwvatlqrqcek 206
                       vehv+++++++h+++++lv+sgla+gak+wv tl+rqce+
  BGIOSGA028102-PA 461 VEHVEVDDSSVHNIYKPLVNSGLAFGAKRWVGTLDRQCER 500
                       **************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466899.84E-1088143IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.608.5E-1489143IPR009057Homeodomain-like
SMARTSM003894.7E-499153IPR001356Homeobox domain
CDDcd000862.26E-10100143No hitNo description
PfamPF000465.0E-9101141IPR001356Homeobox domain
PROSITE profilePS5084839.771271503IPR002913START domain
SuperFamilySSF559616.39E-35272502No hitNo description
CDDcd088754.04E-122275499No hitNo description
SMARTSM002349.9E-61280500IPR002913START domain
PfamPF018528.4E-54281500IPR002913START domain
Gene3DG3DSA:3.30.530.207.1E-7346499IPR023393START-like domain
SuperFamilySSF559616.46E-24522755No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 765 aa     Download sequence    Send to blast
MPPVIGRNGV AYESPSAQLP LTQADMLDSH HLQQALQQQY FDQIPVTTTA AADSGDNMLH  60
GRADAGGLVD EFESKSCSEN VDGAGDGLSG DDQDPNQRPR KKRYHRHTQH QIQEMEAFFK  120
ECPHPDDKQR KELSRELGLE PLQNQHERHE NAQLRAENDK LRAENMRYKE AVSSASCPIA  180
VVPPALGEMS FDEHHLRVEY ARLRDEIDRI SGIAAKHVGK PPIVSFPVLS SPLAVAAARS  240
PLDLAGAYGV VTPGLDMFGG AGDLLRGVHP LDADKPMIVE LAVAAMDELV QMAQLDEPLW  300
SSSSEPAAAL LDEEEYARMF PRGLGPKQYG LKSEASRHGA VVIMTHSNLV EILMDVNQFA  360
TVFSSIVSRA STHEVLSTGV AGNYNGALQV MSMEFQVPSP LVPTRESYFV RYCKNNSDGT  420
WAVVDVSLDS LRPSPVQKCR RRPSGCLIQE MPNGYSKVTW VEHVEVDDSS VHNIYKPLVN  480
SGLAFGAKRW VGTLDRQCER LASAMASNIP NGDLGVITSV EGRKSMLKLA ERMVASFCGG  540
VTASVAHQWT TLSGSGAEDV RVMTRKSVDD PGRPPGIVLN AATSFWLPVP PTAVFDFLRD  600
ETSRSEWDIL SNGGAVQEMA HIANGRDHGN SVSLLRVNSA NSNQSNMLIL QESCTDASGS  660
YVVYAPVDIV AMNVVLNGGD PDYVALLPSG FAILPDGPSG NAQAAVGENG SGSGGGSLLT  720
VAFQILVDSV PTAKLSLGSV ATVNSLIACT VERIKAAVCR DSNPQ
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.119880.0callus| flower| leaf| panicle| root| seed| stem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO379901190.0
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Specifically expressed in the L1-layer of the meristem and protoderm (epidermis) of leaf primordia. During leaf development, expressed in protoderm from plastochron 1 (P1) to P4 and down-regulated at P5 to then disappear. Expressed in the epidermis of primary rachis branch, and in the protoderm of secondary rachis branch primordia. Expressed similarly in L1-layer or protoderm in young and developed floral shoots. During embryogenesis, expressed in the outermost (epidermal) cells 2 days after pollination (DAP) and later at 4 DAP in protodermal cells without any organ differentiation. In nearly mature embryo, strongly expressed in protoderm in the shoot apical meristem (SAM) and lateral organ primordia. {ECO:0000269|PubMed:11846882}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in protoderm differentiation and radial pattern formation during early embryogenesis. {ECO:0000269|PubMed:11846882}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0779930.0AB077993.1 Oryza sativa mRNA for Roc1, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015650023.10.0homeobox-leucine zipper protein ROC1 isoform X2
SwissprotQ6ZAR00.0ROC1_ORYSJ; Homeobox-leucine zipper protein ROC1
TrEMBLB8BBE50.0B8BBE5_ORYSI; Uncharacterized protein
STRINGOPUNC08G04870.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP79938147
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G04890.10.0protodermal factor 2
Publications ? help Back to Top
  1. Lee JH, et al.
    Characterization of Arabidopsis and rice DWD proteins and their roles as substrate receptors for CUL4-RING E3 ubiquitin ligases.
    Plant Cell, 2008. 20(1): p. 152-67
    [PMID:18223036]
  2. Yi J, et al.
    OsMPK6 plays a critical role in cell differentiation during early embryogenesis in Oryza sativa.
    J. Exp. Bot., 2016. 67(8): p. 2425-37
    [PMID:26912801]
  3. Dou M,Cheng S,Zhao B,Xuan Y,Shao M
    The Indeterminate Domain Protein ROC1 Regulates Chilling Tolerance via Activation of DREB1B/CBF1 in Rice.
    Int J Mol Sci, 2016. 17(3): p. 233
    [PMID:26927068]
  4. Chou IT,Gasser CS
    Characterization of the cyclophilin gene family of Arabidopsis thaliana and phylogenetic analysis of known cyclophilin proteins.
    Plant Mol. Biol., 1997. 35(6): p. 873-92
    [PMID:9426607]