PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA028053-PA
Common NameOsI_27949
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family FAR1
Protein Properties Length: 980aa    MW: 110941 Da    PI: 6.6477
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA028053-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR184.51.7e-26103191289
              FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 
                       fY +YA +vGFsvr+++s++sk n++i++ +fvCskeg+++e++    +k+r++ a+ r gC+a+l+v ++ d+kw vtkl++eHnHe+
  BGIOSGA028053-PA 103 FYIAYAGRVGFSVRIARSRRSKCNESIIMLRFVCSKEGFSKEKHVVaGKKTRKRPASIREGCNAMLEVLRRGDSKWIVTKLVKEHNHEV 191
                       9***************************************999877456677777899*****************************96 PP
2FAR157.64.3e-18225315291
              FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk..tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 
                       fY +YA++vGF+ r+++s+ks ++++ ++ ++vCs++ +++ ++++  + k+ +    +r gC+a +++ +++++ w v+kl leH+Hel+p
  BGIOSGA028053-PA 225 FYYSYATRVGFEARVRQSRKS-QDESLKMLKLVCSRHRYHSGRETNggDPKRVQALDPSRDGCDALFEIIRKDRDAWTVSKLILEHTHELNP 315
                       9*******************9.6777**************9999997666777788899******************************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.5E-24103191IPR004330FAR1 DNA binding domain
PfamPF031012.8E-15225315IPR004330FAR1 DNA binding domain
PfamPF105512.5E-12428506IPR018289MULE transposase domain
PROSITE profilePS509669.903685733IPR007527Zinc finger, SWIM-type
PfamPF044343.6E-5686730IPR007527Zinc finger, SWIM-type
SMARTSM005754.4E-5708735IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 980 aa     Download sequence    Send to blast
MEIDGQEAGH EHDGMMEPQV VDLEEEEEDD SINFWASLGV HAVDQMPLHG GVQIVDQPSP  60
PPQEQAQSQS QSVRKDLFPV DSDPCLEPRV GMEFESGEAA KTFYIAYAGR VGFSVRIARS  120
RRSKCNESII MLRFVCSKEG FSKEKHVVAG KKTRKRPASI REGCNAMLEV LRRGDSKWIV  180
TKLVKEHNHE VGMPSRVHYI AMEGDTVVDP YIGMEFESLE AAKTFYYSYA TRVGFEARVR  240
QSRKSQDESL KMLKLVCSRH RYHSGRETNG GDPKRVQALD PSRDGCDALF EIIRKDRDAW  300
TVSKLILEHT HELNPAPTSR VRCIRSQGEV LVIAKNFSDT RNLLLNGLDF QHPREFQYND  360
LGPEDAQSLL RYLKNTQSED PAFFYAVQLN SNGHTANIFW ADAKARMAYY HFGDVVRLGT  420
LCRNSKEYIP IAIFSGINHH LQPVVFGCAL IVDDSEASFA WLFEKWLEAM PVGPPVSLVL  480
EFKQEMAAAA TKILPDTHCT FCEKHILGTV REELGSLYPE PELDHFITDL RKCIDCCRLE  540
ESFESCWDSV IRKYGFRNNE LLQSLYEIRR QWAPAYTRKV FCARNLLPQS CQNLENVIEK  600
HFSSKTQLWV AVQQLGQAVC NFYEKETQAD YLTTFQMATV RTASPLEKQA SSIFTRSIFE  660
KFQDQFAESF GYHADRLEDD MLHKYRVTVS EGDEEAHTVS FNPEKKTVGC SCCLFESCGI  720
LCRHALRVFI IEGVRALPKA YILKRWTKHA KSIATVDDYI DLRGCRDDPS TTMYNDLHCD  780
AIKCAKEGSA SSELYSVAKE ALHKALDEVV TLRKIRDQQN LQSCKRPIKK SAKGKDSDHS  840
TIISSTSCEF FYGKVELPSV VMILHTIIME IFCRSMEECA GQWELNQVAY LAMSDELIFT  900
YGMSGAVHIK SVLLKAGKEH LSGSEWGSIA KRLPEPELSA PGGSRPRQTC PNSWFFFLVH  960
VSIGLLNPTK SAALAHGLLG
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.570480.0leaf
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329960180.0
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126160.0CP012616.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 8 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015650767.10.0protein FAR1-RELATED SEQUENCE 5
TrEMBLB8BB440.0B8BB44_ORYSI; Uncharacterized protein
STRINGOB08G14200.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1832967
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.11e-115FAR1-related sequence 5