PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA027551-PA
Common NameOsI_28041
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family bHLH
Protein Properties Length: 444aa    MW: 45190.6 Da    PI: 7.3321
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA027551-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH120.000393333661654
                       HHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
               HLH  16 iNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                       + ++   L++l+ +      +K + a++L +++eYIk L
  BGIOSGA027551-PA 333 LGDRVTALQQLVSPF-----GKTDTASVLHETIEYIKFL 366
                       556666677777776.....8****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.592317366IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474596.02E-11327386IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.9E-8327388IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.28E-4327370No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 444 aa     Download sequence    Send to blast
MYGGGGVAAG GATTTTGSHG GGGGDWWSAA VSSCSAPAPE TMQGFGGWSA AVVAVDGGGN  60
TSRSAAGNTA SSESPGSLAT GSSITFQEPA GGVADPAAIA VHAQTVAGGG GGGGWNQQPF  120
LDGSGFHGYM SSSRNDHHTN HHHHQINTPS LMSNSSSNNG VMLQEHQHDQ NYQFLSNLGF  180
ELLSSPTSPY GGGGGFRSSL LRSLTEPAAA AKPNDSPGFQ QYHHHQPAMN LQPPAAAAGR  240
EPLQFTNSTA APFWNPSSGF TVAAEGTALG GAGASPAQPT PASLAAKRAL EGVGDSSSII  300
TKKAKADSTP LKKSRTGTPS ALPTTFKVRK EKLGDRVTAL QQLVSPFGKT DTASVLHETI  360
EYIKFLHDQV GALSAPYLKN RQQVPHLKNS TGVDNDGGGG GEATAASKRD LTGRGLCLVP  420
ISSTFAVASE TPVDFWTPFG AAFR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126160.0CP012616.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 8 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015648821.10.0transcription factor bHLH112 isoform X2
TrEMBLA2YRU30.0A2YRU3_ORYSI; Uncharacterized protein
STRINGORUFI08G05340.10.0(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP22163787
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G61660.13e-42bHLH family protein