PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA027492-PA
Common NameOsI_28158
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family WRKY
Protein Properties Length: 689aa    MW: 78529.8 Da    PI: 6.5733
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA027492-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY52.78.3e-1763118359
                       -SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
              WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                       DgynWr  GqK+v+g  + + YY C++a+C + k v rsa d+++ +++ +g+Hnh+
  BGIOSGA027492-PA  63 DGYNWRMCGQKVVQGGCHQKFYYECSQANCGAEKSVTRSA-DGQIKKTVCKGSHNHP 118
                       9***************************************.***************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.803.9E-1651119IPR003657WRKY domain
SuperFamilySSF1182907.45E-1755119IPR003657WRKY domain
SMARTSM007748.4E-1161119IPR003657WRKY domain
PROSITE profilePS5081114.58463120IPR003657WRKY domain
PfamPF031066.0E-1563118IPR003657WRKY domain
PROSITE profilePS508089.661238293IPR003656Zinc finger, BED-type
SMARTSM006145.7E-9238289IPR003656Zinc finger, BED-type
SuperFamilySSF576675.24E-6241288No hitNo description
PfamPF028923.8E-5241286IPR003656Zinc finger, BED-type
SuperFamilySSF530981.14E-39299681IPR012337Ribonuclease H-like domain
PfamPF143721.9E-20517607IPR025525hAT-like transposase, RNase-H fold
PfamPF056997.5E-14617671IPR008906HAT, C-terminal dimerisation domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 689 aa     Download sequence    Send to blast
MENNQSGQAQ DGMADQRFRS WLTEQLNAQP HAGSSSNLEV MQMQVLPSHT NFQSIDTHPH  60
EYDGYNWRMC GQKVVQGGCH QKFYYECSQA NCGAEKSVTR SADGQIKKTV CKGSHNHPRS  120
SDRWFRGDGS ATLDAIPVGE ILQAAGVIRP SVAMPRNEEE DELQSGSTDS EEDELQSGWS  180
DSEEDDASEA RAAGDANAIR HDPAAAAQET TAENTTQVDV LGNGCQQHTN YHRSEKGRSN  240
SKVWEDFTAV SSGGKLQSAE CEHCKICLSG KTSEGTNHLH KHLKTCPAQC RTTRLQQKVH  300
FIDNEWKMNR KIISYGYGRY PDGADYYVGI LTYWKSCLDI REDPSSLIKE AVQDWNLEHK  360
LLGLAWQKYF PDKVALDLEE YMAGEVHNYL LAKYKLLTVP CMIDALHDLF GYDLGNIVKE  420
LSKQWFGYMT CSALRLEKYK EILSRMHLSK PSLGSKGWYL TFYLFEAALQ FNKAFPYPEE  480
MDLKMDIRKP SPQRLEATKN FCDLVRPIYH AIDLLSKQYV TSNSHFHALW RVGIALGESS  540
RKPNIKCIIN VDDMKKKYDK LWRKCYVWLS LAVFLDPRFK LRYLDHCFTQ AFLSGAKMCI  600
LEIRMTLGQG AHGEFRELTS YIEGELYPQN DQFDILKWWK DNALMYPTLA KLARDILAIP  660
GSPVSAESAF DRIDERRQVM KIVEAEIVL
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO1154752000.0
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0054160.0AP005416.3 Oryza sativa Japonica Group genomic DNA, chromosome 8, BAC clone:OSJNBb0094P23.
GenBankAP0054990.0AP005499.3 Oryza sativa Japonica Group genomic DNA, chromosome 8, PAC clone:P0412D08.
GenBankAP0149640.0AP014964.1 Oryza sativa Japonica Group DNA, chromosome 8, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015649132.10.0zinc finger BED domain-containing protein RICESLEEPER 1-like
RefseqXP_015649133.10.0zinc finger BED domain-containing protein RICESLEEPER 1-like
TrEMBLB8BBM70.0B8BBM7_ORYSI; Uncharacterized protein
STRINGOS08T0198100-000.0(Oryza sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP140321024
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01080.16e-14WRKY DNA-binding protein 58