PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA027489-PA
Common NameOsI_28164
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family WRKY
Protein Properties Length: 851aa    MW: 95455.2 Da    PI: 7.0389
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA027489-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY49.58.8e-1661118259
                       --SS-EEEEEEE--TT-SS-E.EEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
              WRKY   2 dDgynWrKYGqKevkgsefpr.sYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                       dDgy+Wr  Gq +++g ++    YY+C++a+C+v+k v rsa d++++++   g Hnh+
  BGIOSGA027489-PA  61 DDGYHWRMCGQNTIQGEPCQTiFYYQCAQANCMVQKSVARSA-DGQTTQTFSMGVHNHP 118
                       8****************986527*******************.***************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081113.04655120IPR003657WRKY domain
SuperFamilySSF1182904.45E-1556119IPR003657WRKY domain
Gene3DG3DSA:2.20.25.809.6E-1458119IPR003657WRKY domain
SMARTSM007745.9E-860119IPR003657WRKY domain
PfamPF031065.9E-1461118IPR003657WRKY domain
SMARTSM006146.7E-14233284IPR003656Zinc finger, BED-type
PfamPF028922.2E-6236281IPR003656Zinc finger, BED-type
SuperFamilySSF576671.79E-6236284No hitNo description
SuperFamilySSF530981.06E-84381842IPR012337Ribonuclease H-like domain
PfamPF143723.4E-19614713IPR025525hAT-like transposase, RNase-H fold
PfamPF056991.4E-19758840IPR008906HAT, C-terminal dimerisation domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 851 aa     Download sequence    Send to blast
MDNQSGQPQY GMADHGFRPF SASISAPSTA QQHTGSSSNT AVIQVATPPS HTDYGNIYLA  60
DDGYHWRMCG QNTIQGEPCQ TIFYYQCAQA NCMVQKSVAR SADGQTTQTF SMGVHNHPQR  120
SVRWLRDGSE RLEPMSQVGV LVGASDAAGA TVGPSVPETG NGNDQTSGSS DSDEDNDGDV  180
GIDGDAAAAV DANALQRHVA APIQGNIART ASEVGILDHR ARQENSHPRK KRRFKSKVWE  240
EFKAVLIDGK VQSAICNHCK NCLVGETTKG TSHLRRHLKS CPAKAGTSRV QKKQRISTLQ  300
PDSSVSKDLK YGQVNPLEEF MRAIVSKLCP FSAMYGASFA PFLAGRNPVL NMVPQSTLEE  360
KFLSIYEKEK QKLKEKIIAT PGGVFLSLDS WYWDADVELY IICITVHFID GDWKINRKTI  420
RCSPKLVGSY MLGLLPRLKS NIVNVKMVLK EVVQDWGLQE KLLGVTLQPS EDSIKEASLH  480
LEDDLTGRKY LVAKCKLLNI PCMVTALHEL IEDSIMCDMT PAWSCYMTSS PERKQKYEQV  540
LSQLHLDGAS YGSKNWYSQF CLYEAALQFI KSFPLPEDRR HQTNPLRPSF DDLEAIESFC  600
KIARPIYIAV KAISGPHNVM YNSYFHVIWR LVAVIRELPS MNNTERNFHV PVVQKEFDNN  660
WRKWYLWLSI AVVLDPRYKL GFIELCFRQD FSHDAGMYIS EVRAKLYELY IQYSYDNGQS  720
NEILNNRNSD SGTQISAPLD NQIQNYTIAQ AAVEEFKELN EYLGGGLCPQ NDSFDILKWW  780
RDNSSTYPTL AKMARDILAI PGCAVSAESA FDSCDQRVEV FKGKFRPETA EALVCAQSWI  840
KSSGTTFYFR L
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1229234KKRRFK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126160.0CP012616.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 8 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015648157.10.0zinc finger BED domain-containing protein RICESLEEPER 2-like isoform X1
TrEMBLA2YS660.0A2YS66_ORYSI; Uncharacterized protein
STRINGORUFI08G06360.10.0(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP140321024
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01080.12e-12WRKY DNA-binding protein 58