PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA027187-PA
Common NameOsI_28786
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family B3
Protein Properties Length: 423aa    MW: 48115.5 Da    PI: 7.031
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA027187-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B353.15.6e-17461231598
                       -EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
                B3  15 rlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                       +l++pk+f+++ +g+   + +++le+ + +s++v++  +k+++++++++GW +Fvk  +L+ gD+++F+++g+s+f   v +f+
  BGIOSGA027187-PA  46 QLTIPKEFVQRLKGD--IPEEIQLETHNRNSYTVRV--DKSQEKVIFAAGWAQFVKTFDLRMGDSMMFRFKGNSQF--DVIIFD 123
                       79*******999888..5668***************..**********************************9999..777776 PP
2B336.68.2e-123394181498
                       T-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
                B3  14 grlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                       + l++ k++++e+ gg+       +  ++ g +W ++l   +++g+ + + +GW++Fv++n+  +gD+++F+l +++++++  ++++
  BGIOSGA027187-PA 339 STLSVAKRYVDEYlGGE-----RFISLSRLGGKWGIRL--AGGGGSgTRMVGGWQKFVNENDFGVGDICLFELLKNHKGTMDSHIIK 418
                       67999999999996544.....2555678999******..555555588999********************999988888777765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019363.34E-1922123IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.0E-1924124IPR015300DNA-binding pseudobarrel domain
SMARTSM010192.5E-734125IPR003340B3 DNA binding domain
PfamPF023627.7E-1446123IPR003340B3 DNA binding domain
CDDcd100173.72E-1646123No hitNo description
PROSITE profilePS5086311.91447125IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.4E-15318418IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.04E-15320419IPR015300DNA-binding pseudobarrel domain
CDDcd100173.76E-12323418No hitNo description
SMARTSM010191.9E-5325420IPR003340B3 DNA binding domain
PROSITE profilePS5086310.63326420IPR003340B3 DNA binding domain
PfamPF023621.7E-9338418IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 423 aa     Download sequence    Send to blast
MGTWCERCRR RDEQDYRNLD DCQKHFLLLM MGDFQHEIRG EQIVEQLTIP KEFVQRLKGD  60
IPEEIQLETH NRNSYTVRVD KSQEKVIFAA GWAQFVKTFD LRMGDSMMFR FKGNSQFDVI  120
IFDQVGREKV CSVAVDDYLD PNVQEGRTDA TETLNSSRAH SQDDYLDPNV QEGRTNATET  180
LNSSRAHSQP MPMQTPATET LNSSRAHSQD MPMQSPATET LNSSRAHPQP MPMQLPTETV  240
NHFHAPHYPM QMPIENMALS RTQAMPTQMQ SPPTYRWTQV QRDNLSCRVG VIPDPIIGRR  300
TKLNPVQEKV VNFKIQHIHS EIPIFVAVIK RSNVSGVLST LSVAKRYVDE YLGGERFISL  360
SRLGGKWGIR LAGGGGSGTR MVGGWQKFVN ENDFGVGDIC LFELLKNHKG TMDSHIIKAT  420
DIF
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.526231e-125callus| stem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329783771e-125
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2234410.0AC223441.1 Oryza glaberrima, complete sequence.
GenBankAC2370910.0AC237091.1 Oryza glaberrima clone OG_BBa0009K13, complete sequence.
GenBankAP0046370.0AP004637.3 Oryza sativa Japonica Group genomic DNA, chromosome 8, PAC clone:P0703C03.
GenBankAP0054930.0AP005493.3 Oryza sativa Japonica Group genomic DNA, chromosome 8, BAC clone:OSJNBa0078D03.
GenBankAP0149640.0AP014964.1 Oryza sativa Japonica Group DNA, chromosome 8, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025875809.10.0putative B3 domain-containing protein Os08g0325100
SwissprotQ6Z0D20.0Y8251_ORYSJ; Putative B3 domain-containing protein Os08g0325100
TrEMBLB8B9R50.0B8B9R5_ORYSI; Uncharacterized protein
STRINGONIVA08G11320.10.0(Oryza nivara)
STRINGORGLA08G0091000.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP124821536
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.12e-16B3 family protein