PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA027003-PA
Common NameOsI_29182
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family ERF
Protein Properties Length: 84aa    MW: 9136.08 Da    PI: 7.6816
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA027003-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP250.94e-162979256
               AP2  2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkklege 56
                      +++GVr ++ +g++ AeI++      ++++ +lg+f+taeeA + +++a+++l+g+
  BGIOSGA027003-PA 29 KFHGVRKRP-WGKYGAEIHV----SqQSAHMWLGTFDTAEEATRVYDHAALRLRGP 79
                      89*******.**********....3245**************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.101.4E-222884IPR001471AP2/ERF domain
PROSITE profilePS5103218.3072984IPR001471AP2/ERF domain
PfamPF008471.9E-92978IPR001471AP2/ERF domain
SMARTSM003801.5E-182984IPR001471AP2/ERF domain
SuperFamilySSF541711.5E-162984IPR016177DNA-binding domain
CDDcd000181.61E-212984No hitNo description
PRINTSPR003671.2E-83041IPR001471AP2/ERF domain
PRINTSPR003671.2E-85268IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 84 aa     Download sequence    Send to blast
MCRSGEEEDG SGGGRGGFGT SVDVAPERKF HGVRKRPWGK YGAEIHVSQQ SAHMWLGTFD  60
TAEEATRVYD HAALRLRGPS GMTN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A3e-1629841470Ethylene-responsive transcription factor ERF096
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126161e-140CP012616.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 8 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015642210.22e-30ethylene-responsive transcription factor 11
TrEMBLB8BAK62e-55B8BAK6_ORYSI; Uncharacterized protein
STRINGOBART08G14070.15e-40(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP131332332
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G53290.11e-22cytokinin response factor 3