PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA026937-PA
Common NameOsI_29333
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family bHLH
Protein Properties Length: 352aa    MW: 36589 Da    PI: 6.2758
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA026937-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH45.81.1e-14130176354
                       HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
               HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                       r+h+e+ErrRR+riN  +++Lr+llP+      +K +Ka+ L +++e++k+L
  BGIOSGA026937-PA 130 RSHSEAERRRRQRINGHLARLRSLLPNT-----TKTDKASLLAEVIEHVKEL 176
                       78*************************9.....8****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088817.066127176IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.21E-14130179No hitNo description
PfamPF000104.1E-12130176IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.107.3E-15131185IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.88E-15131185IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.4E-14133182IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:3.30.70.2609.9E-4225276No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 352 aa     Download sequence    Send to blast
MWEAVGGGDG TALLPWPGSA AAATTSGAAA PLYMPPAAAA AAPFAAGEQL PVEQPFYFDG  60
GGGVAGHNHH PHHHQYGMEA PPPLTMMQMG GGGSSSSRMV VSGLLGTLQA ELGRMTAKEI  120
MDAKALAASR SHSEAERRRR QRINGHLARL RSLLPNTTKT DKASLLAEVI EHVKELKRQT  180
SAMMEDGAAG GEAAAAPVVL LPTEDDELEV DAAADEGGRL VARASLCCED RADLIPGIAR  240
ALAALRLRAR RAEIATLGGR VRSVLLIAAV EEEDPDEAGN DDDGEHGYGV AASHRRHELV  300
ASIHEALRGV MNRKAASSDT SSSGAGGGGG SIKRQRMISA HDQQGSFNSS GW
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329948250.0
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1096160.0AK109616.1 Oryza sativa Japonica Group cDNA clone:002-137-H01, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015648851.10.0transcription factor bHLH30
TrEMBLA0A0E0IC780.0A0A0E0IC78_ORYNI; Uncharacterized protein
TrEMBLB8BB090.0B8BB09_ORYSI; Uncharacterized protein
STRINGONIVA08G16750.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP19183898
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68810.19e-39bHLH family protein