PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA026851-PA
Common NameOsI_29510
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family HD-ZIP
Protein Properties Length: 352aa    MW: 36798.2 Da    PI: 7.5077
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA026851-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox56.54.6e-18171225256
                       T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
          Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                       rk+ +++keq   Lee F+++++++ +++  LAk+l+L  rqV vWFqNrRa+ k
  BGIOSGA026851-PA 171 RKKLRLSKEQSAFLEESFKEHSTLNPKQKVALAKQLNLRPRQVEVWFQNRRARTK 225
                       788899***********************************************98 PP
2HD-ZIP_I/II128.43e-41171261192
       HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 
                       +kk+rlskeq+++LEesF+e+++L+p++Kv+la++L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lkr++++l+een+rL+ke +eLr +lk
  BGIOSGA026851-PA 171 RKKLRLSKEQSAFLEESFKEHSTLNPKQKVALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCETLTEENRRLHKELAELR-ALK 261
                       69*************************************************************************************9.665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.6E-18155225IPR009057Homeodomain-like
SuperFamilySSF466892.01E-18158228IPR009057Homeodomain-like
PROSITE profilePS5007117.167167227IPR001356Homeobox domain
SMARTSM003896.3E-16169231IPR001356Homeobox domain
CDDcd000861.44E-17171228No hitNo description
PfamPF000461.7E-15171225IPR001356Homeobox domain
PROSITE patternPS000270202225IPR017970Homeobox, conserved site
PfamPF021831.0E-10227261IPR003106Leucine zipper, homeobox-associated
SMARTSM003403.5E-25227270IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 352 aa     Download sequence    Send to blast
MELGLSLGDA VTVADGGRLE LVLGLGVGVG AGVRRGEEEE RGRREDVVGA ARWAAMAAAS  60
PEPSVRLSLV SSLGLHWPSE TGRSEAAARG FDVNRAPSVA AGAPGMEDDE EGPGAAPALS  120
SSPNDSGGSF PLDLSGHGLR GHAEAAAQGG GGGGERSSSR ASDDDEGASA RKKLRLSKEQ  180
SAFLEESFKE HSTLNPKQKV ALAKQLNLRP RQVEVWFQNR RARTKLKQTE VDCEYLKRCC  240
ETLTEENRRL HKELAELRAL KTARPFYMHL PATTLSMCPS CERVASNPAT ASTSAPAAAT  300
SPAAAPTAAA RTAVASPEPH RPSSFAALFA APLGFPLTAA QPRPPPPASN CL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1219227RRARTKLKQ
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.805230.0leaf
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO2977264980.0
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in seedlings, roots, stems, leaf sheaths and blades and panicles. {ECO:0000269|PubMed:17999151}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2411960.0AK241196.1 Oryza sativa Japonica Group cDNA, clone: J065121H01, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015648883.10.0homeobox-leucine zipper protein HOX27 isoform X2
SwissprotA2YW030.0HOX27_ORYSI; Homeobox-leucine zipper protein HOX27
TrEMBLB8BBL80.0B8BBL8_ORYSI; Uncharacterized protein
STRINGOMERI08G13770.10.0(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP52093363
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06710.14e-70homeobox from Arabidopsis thaliana