PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA026779-PA
Common NameOsI_29646
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family bHLH
Protein Properties Length: 302aa    MW: 31351.6 Da    PI: 4.826
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA026779-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH43.17.5e-14138188154
                       CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
               HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                       +r++h ++Er+RR+++N+ ++ Lr+l+P +   + ++ + a+i   A++Y+k++
  BGIOSGA026779-PA 138 QRMTHIAVERNRRKQMNEYLAVLRSLMPAS---YVQRGDQASIIGGAINYVKEM 188
                       79****************************...9*****************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.93E-14136193No hitNo description
Gene3DG3DSA:4.10.280.102.4E-14136193IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.485137188IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.84E-17137205IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.3E-11138188IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.2E-10143194IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 302 aa     Download sequence    Send to blast
MALEAVVFSE GYYFGCGGAM AAEAAAGGAW SWSHGYGGGV DQGKGAMELV VDDGVVNAFW  60
DGGGGGASSS PVMAAVSGFI EEPDGGNSSV ADAAPPPEHG GASVVGRDGS AAAPAAAAGR  120
RKRRRARTVK NREEVESQRM THIAVERNRR KQMNEYLAVL RSLMPASYVQ RGDQASIIGG  180
AINYVKEMEQ LLQSLEAHRH ARRARTDAAA ALPFAGFFTF PQYSMSAVPT TTTTTVAAAA  240
TENGNAVAGA GAGDDADRAR VGVEAVEEDC QLTSVDDIAA AVHGIVETIE QEQQQQQKQS  300
CS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1120124RKRRR
2138149RMTHIAVERNRR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.551740.0panicle
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329928350.0
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1076260.0AK107626.1 Oryza sativa Japonica Group cDNA clone:002-131-D10, full insert sequence.
GenBankHQ8588610.0HQ858861.1 Oryza sativa Japonica Group isolate UT1670 bHLH transcription factor mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015649413.11e-121transcription factor bHLH96
TrEMBLA2YWD40.0A2YWD4_ORYSI; Uncharacterized protein
STRINGORUFI08G20670.11e-121(Oryza rufipogon)
STRINGORGLA08G0160400.11e-121(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP74138156
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22490.14e-40bHLH family protein