PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | BGIOSGA026481-PA | ||||||||
Common Name | OsI_30288 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | NAC | ||||||||
Protein Properties | Length: 656aa MW: 71907.6 Da PI: 4.3536 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 170.9 | 4e-53 | 21 | 148 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 l+pGfrFhPtdeelv++yLk+kv+g++l++ ++i+evd+ykvePwdLp+ ++++++++wyfFs+ d+k+a+ r+nrat+ gyWk+tgkd+e BGIOSGA026481-PA 21 LAPGFRFHPTDEELVSYYLKRKVHGRPLKV-DAIAEVDLYKVEPWDLPArsRLRSRDSQWYFFSRLDRKHANRARTNRATAGGYWKTTGKDRE 112 579***************************.99***************4357888999*********************************** PP NAM 92 vlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 v + + ++vg+kktLvf+ grapkge+t+Wvmheyrl BGIOSGA026481-PA 113 VRN-GPTTVGMKKTLVFHAGRAPKGERTNWVMHEYRL 148 **9.999****************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 2.22E-60 | 14 | 168 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 58.612 | 21 | 168 | IPR003441 | NAC domain |
Pfam | PF02365 | 6.7E-29 | 23 | 148 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009644 | Biological Process | response to high light intensity | ||||
GO:0009962 | Biological Process | regulation of flavonoid biosynthetic process | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005737 | Cellular Component | cytoplasm | ||||
GO:0016021 | Cellular Component | integral component of membrane | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 656 aa Download sequence Send to blast |
MSHPSSSSSS APPAAAEATS LAPGFRFHPT DEELVSYYLK RKVHGRPLKV DAIAEVDLYK 60 VEPWDLPARS RLRSRDSQWY FFSRLDRKHA NRARTNRATA GGYWKTTGKD REVRNGPTTV 120 GMKKTLVFHA GRAPKGERTN WVMHEYRLDG QTTIPPQDSF VVCRIFQKAG PGPQNGAQYG 180 APFVEEEWEE DDEDVGLLPV EEKDNSDDQE KEISGAMEKG YLQMSDLVQN LVDQNENGTI 240 ALPVSDNSNN SNHSEDVDGN SGDILSDQNL GSNFLHHVEP VEQNGLVLNE NMFSSANAGD 300 LFNISSPNDG FLELKDFADI ADLENPLANE STIWPSDGWP WKSTDSMEAV NGASNEFSPL 360 AGEQIFQPEE LEQLLQSLQE DSHMGSTISD PPHSSITNLA KPEEDCLMFY DAPFDSSMCD 420 DGFRQLNGFL GSPSTNLSGI DMVDDGMPYY DAMDDNLFND LLSSVQPSAG SSSHAFSGPV 480 LTQEVNNTTY TYSPTQKVLE PNFVVGAPSS ARLPEAGSQL NYVVLPDSQT KSSLIGKRFV 540 KILDSISAPP AFAAAEFPAS LRKSLAPISG AHHNTIRVSA EVISIGSLTP ASQDKWSLEK 600 DEGMELLFSA GFEPDTRVHF GCNTITAVLR GGFCLFFFSA IMLLVSYEVG MCIYGK |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 3e-47 | 16 | 168 | 9 | 168 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Os.9354 | 0.0 | callus| flower| leaf| panicle| root| seed| stem |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 37990396 | 0.0 |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00059 | PBM | Transfer from AT5G04410 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK099629 | 0.0 | AK099629.1 Oryza sativa Japonica Group cDNA clone:J013057D07, full insert sequence. | |||
GenBank | AK120773 | 0.0 | AK120773.1 Oryza sativa Japonica Group cDNA clone:J023008J18, full insert sequence. | |||
GenBank | KF280262 | 0.0 | KF280262.1 Oryza sativa Japonica Group NAC transcription factor (NAC40) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015649510.1 | 0.0 | uncharacterized protein LOC4346333 | ||||
TrEMBL | A2YY63 | 0.0 | A2YY63_ORYSI; Uncharacterized protein | ||||
TrEMBL | I1QKG5 | 0.0 | I1QKG5_ORYGL; Uncharacterized protein | ||||
STRING | ORGLA08G0191600.1 | 0.0 | (Oryza glaberrima) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP7107 | 36 | 50 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G10500.1 | 2e-72 | NAC domain containing protein 53 |