PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA026051-PA
Common NameOsI_26689
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family GRAS
Protein Properties Length: 473aa    MW: 50582.5 Da    PI: 5.2589
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA026051-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS293.84.4e-90774702373
              GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetsekn....sseelaalkl..fsevs 88 
                       ++lL++cA+a++++d++l+q++L+ l+++a  dgd++qRl+a f+ AL +r +r  ++ +ka+++  ++  +    ++++++a++l  f +++
  BGIOSGA026051-PA  77 EQLLVHCANAIEANDATLTQQILWVLNNIAPADGDSNQRLTAAFLCALVSRASR--TGACKAVTAAVADAVEsaalHVHRFTAVELasFIDLT 167
                       79***************************************************9..44454443333322221234666666666689***** PP

              GRAS  89 PilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg....skeeleetgerLakfAeelgvpfe 177
                       P+++f++ +aN aI+eaveg   vHi+D++ ++++Q p+L++ La R+egpp lR+T+ + + s         +ee+g +L +fA++ +++++
  BGIOSGA026051-PA 168 PWHRFGYTAANAAIVEAVEGFPVVHIVDLSTTHCMQIPTLIDMLAGRAEGPPILRLTVADVAPSApppaLDMPYEELGAKLVNFARSRNMSMD 260
                       **********************************************************9886666787777789******************* PP

              GRAS 178 fnvl.......vakrledleleeLrvkpgEalaVnlvlqlhrlldesvsles.........erdevLklvkslsPkvvvvveqeadhnsesFl 254
                       f+v+       +++ +++l++++L  + gEal+Vn+++ lh+++de++ + s          r+ +Lk ++ l P++vvvv+++ad ++++ +
  BGIOSGA026051-PA 261 FRVVptspadaLTSLVDQLRVQQLVSDGGEALVVNCHMLLHTVPDETAGSVSlttaqppvsLRTMLLKSLRALDPTLVVVVDEDADFTAGDVV 353
                       ****887666555566677777777777****************887665555445566657899**************************** PP

              GRAS 255 erflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksd 347
                        r+  a+++ +  +d++++ l + se+r+++E+e +g++++nv+a+eg er+er+e  ++W +r+++aGF++++++e+aa ++k++l+ ++  
  BGIOSGA026051-PA 354 GRLRAAFNFLWIPYDAVDTFLLKGSEQRRWYEAE-VGWKVENVLAQEGVERVERQEDRARWGQRMRAAGFRAAAFGEEAAGEVKAMLNDHA-A 444
                       **********************************.********************************************************.8 PP

              GRAS 348 gyrveeesgslvlgWkdrpLvsvSaW 373
                       g+ ++ e++ lvl+Wk++++v++SaW
  BGIOSGA026051-PA 445 GWGMKREDDDLVLTWKGHNVVFASAW 470
                       89999********************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098546.19350452IPR005202Transcription factor GRAS
PfamPF035141.5E-8777470IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 473 aa     Download sequence    Send to blast
MMQFTHTAPP PPPLHPNGHG LGLGLYLDVG ATRGGGGARP WSSSSSTTTL GGSGYFPSSA  60
AASKISLGNL NSTGCMEQLL VHCANAIEAN DATLTQQILW VLNNIAPADG DSNQRLTAAF  120
LCALVSRASR TGACKAVTAA VADAVESAAL HVHRFTAVEL ASFIDLTPWH RFGYTAANAA  180
IVEAVEGFPV VHIVDLSTTH CMQIPTLIDM LAGRAEGPPI LRLTVADVAP SAPPPALDMP  240
YEELGAKLVN FARSRNMSMD FRVVPTSPAD ALTSLVDQLR VQQLVSDGGE ALVVNCHMLL  300
HTVPDETAGS VSLTTAQPPV SLRTMLLKSL RALDPTLVVV VDEDADFTAG DVVGRLRAAF  360
NFLWIPYDAV DTFLLKGSEQ RRWYEAEVGW KVENVLAQEG VERVERQEDR ARWGQRMRAA  420
GFRAAAFGEE AAGEVKAMLN DHAAGWGMKR EDDDLVLTWK GHNVVFASAW APS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_B1e-477747334421Protein SHORT-ROOT
5b3h_E1e-477747334421Protein SHORT-ROOT
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.609450.0callus| panicle| root
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO2976075470.0
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in seedlings, leaves and flowers. {ECO:0000269|PubMed:18500650}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126150.0CP012615.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 7 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015645421.10.0scarecrow-like protein 32
SwissprotQ9SN221e-160SCL32_ARATH; Scarecrow-like protein 32
TrEMBLB8B8080.0B8B808_ORYSI; Uncharacterized protein
STRINGONIVA07G19060.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP56973759
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49950.11e-151GRAS family protein