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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
BGIOSGA025964-PA |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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| Family |
GRAS |
| Protein Properties |
Length: 441aa MW: 47586.8 Da PI: 5.594 |
| Description |
GRAS family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| BGIOSGA025964-PA | genome | RIS | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | GRAS | 361.2 | 1.5e-110 | 53 | 418 | 2 | 374 |
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfs 94
+lLl+cAeav+ ++l +a+ lL ++ elasp g++ +R+aayf AL ar+++s + y+ l+ ++ + +s + a+++++ +sP++kfs
BGIOSGA025964-PA 53 LSLLLRCAEAVAMDQLPEARDLLPEIAELASPFGSSPERVAAYFGDALCARVLSSYLGAYSPLALRPLAAAQSRRISGAFQAYNALSPLVKFS 145
689******************************************************************999********************* PP
GRAS 95 hltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrle 187
h+taNqaI +a++ge+rvH+iD+di+qGlQWp L++ LasRp +p slRiTg+g+ s + le+tg+rLa+fA++lg+pfef+++ k +
BGIOSGA025964-PA 146 HFTANQAIFQALDGEDRVHVIDLDIMQGLQWPGLFHILASRPTKPRSLRITGLGA----SLDVLEATGRRLADFAASLGLPFEFRPIEGKIGH 234
*******************************************************....9**************************7666555 PP
GRAS 188 dleleeLrvkp..gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpre 278
+ +L + gEa++V++++ h l+d ++s + +++l+ksl+Pk++++veq++ h s++Fl rf+eal+yysalfd+l +++++
BGIOSGA025964-PA 235 VADAAALLGPRhhGEATVVHWMH--HCLYDVTGSDAG----TVRLLKSLRPKLITIVEQDLGH-SGDFLGRFVEALHYYSALFDALGDGAGAA 320
5566666443358*********9..888888888888....**********************.899*******************5443333 PP
GRAS 279 s...eerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLv 368
+ er+ vEr+llg ei+n+va g +r+ + + +e+W + l++aGF+pv+l + a+qa+lll +++++gy++ ee+g+l lgWkd +L+
BGIOSGA025964-PA 321 EeeaAERHAVERQLLGAEIRNIVAVGGPKRTGEVR-VERWGDELRRAGFRPVTLAGSPAAQARLLLGMYPWKGYTLVEEDGCLKLGWKDLSLL 412
323699***********************998887.9******************************************************** PP
GRAS 369 svSaWr 374
++S+W+
BGIOSGA025964-PA 413 TASSWE 418
*****5 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 441 aa
Download sequence Send
to blast |
MKAKRAADDE EEGGERERAR GKRLAAEGKQ GLVVVSTGEE EEAAAETRGL RLLSLLLRCA 60
EAVAMDQLPE ARDLLPEIAE LASPFGSSPE RVAAYFGDAL CARVLSSYLG AYSPLALRPL 120
AAAQSRRISG AFQAYNALSP LVKFSHFTAN QAIFQALDGE DRVHVIDLDI MQGLQWPGLF 180
HILASRPTKP RSLRITGLGA SLDVLEATGR RLADFAASLG LPFEFRPIEG KIGHVADAAA 240
LLGPRHHGEA TVVHWMHHCL YDVTGSDAGT VRLLKSLRPK LITIVEQDLG HSGDFLGRFV 300
EALHYYSALF DALGDGAGAA EEEAAERHAV ERQLLGAEIR NIVAVGGPKR TGEVRVERWG 360
DELRRAGFRP VTLAGSPAAQ ARLLLGMYPW KGYTLVEEDG CLKLGWKDLS LLTASSWEPT 420
DGDADADVAV AGDTHHESHD S
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| Expression --
Description ? help
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| Source |
Description |
| Uniprot | TISSUE SPECIFICITY: Expressed in seedlings, cotyledons, shoot apex, leaves and flowers. |
| Functional Description ? help
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| Source |
Description |
| UniProt | Probable transcription factor involved in plant development. {ECO:0000250}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AP003866 | 0.0 | AP003866.3 Oryza sativa Japonica Group genomic DNA, chromosome 7, BAC clone:OJ1092_A07. |
| GenBank | AP014963 | 0.0 | AP014963.1 Oryza sativa Japonica Group DNA, chromosome 7, cultivar: Nipponbare, complete sequence. |
| GenBank | CP012615 | 0.0 | CP012615.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 7 sequence. |
