PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA025948-PA
Common NameOsI_26487
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family FAR1
Protein Properties Length: 690aa    MW: 77510.5 Da    PI: 8.3435
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA025948-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR187.61.9e-27116203190
              FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                       +fYn+YA++vGF vr+s+  ++++n  it+rtfvCs+eg+re+++ + ++++ +r+etr+gC a+++++++++gk+++t+++ +HnH+la
  BGIOSGA025948-PA 116 DFYNAYAEMVGFFVRRSTLWTTSKNI-ITRRTFVCSREGFREKKRGT-KEAKCPRPETRIGCPASMTIRLNTNGKYRLTEFVPNHNHQLA 203
                       6********************97766.****************9988.99**************************************97 PP
2FAR184.41.9e-26245331189
              FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 
                       +fY+ YA ++GF+vr+++++ +  ++ it+r fvCskeg+re+++ + ++ +++r+etrtgC a+++++++++gk++vt++++ HnH+l
  BGIOSGA025948-PA 245 EFYSMYAGKIGFNVRRASMTMN-AENVITRRMFVCSKEGFREKKRGA-KRVKKPRPETRTGCPACMVIRLTSNGKYHVTEFVTFHNHQL 331
                       6*****************9999.5556****************9998.99*************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031017.7E-25116203IPR004330FAR1 DNA binding domain
PfamPF031011.0E-22245331IPR004330FAR1 DNA binding domain
PROSITE profilePS5096610.843503550IPR007527Zinc finger, SWIM-type
PfamPF044346.8E-9503549IPR007527Zinc finger, SWIM-type
SMARTSM005751.0E-6525552IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 690 aa     Download sequence    Send to blast
MPSNSGGSAK EKDPENAPEL VALPLVRTLR PVHAVIDPAA DPRSAQLSWP GHVVLLPPYA  60
TWPHHVPTPP PAVNPANPQQ NGDVAAADVS PDVGCCDEKM LPKVDMLFDG EKEAYDFYNA  120
YAEMVGFFVR RSTLWTTSKN IITRRTFVCS REGFREKKRG TKEAKCPRPE TRIGCPASMT  180
IRLNTNGKYR LTEFVPNHNH QLATASTMRM LKAKKIRLKA RAARENLVDD TVRTPEFGSE  240
DEAYEFYSMY AGKIGFNVRR ASMTMNAENV ITRRMFVCSK EGFREKKRGA KRVKKPRPET  300
RTGCPACMVI RLTSNGKYHV TEFVTFHNHQ LGATVPSDLV ATSQSTETGQ DDGLDLVDGS  360
ADANIHRQNL IIGNIMATSL EDLFSLKEKW ALPYGREAFC ADMKSVQQKE SLGTELKKHL  420
SLEFDLLSFF KQFERVLCDR RSTELQADVD ASQSTKKPPP MRVLRQASNI YTPAAFKMFE  480
REFELYMDCM LYNCGEMGTI SEYRVVIEDN PKDHFVKFDS LNSMVNCSCK GFEFVGIPCR  540
HMLKVLDTRN IKDLPPQYFL KRWRKDAKSG SPNCSYSFPL DGDPQLVQTK RYNLLCRMFS  600
IAAARAATSI ETFAYMENQS SIFMDQVEQA LQTRPPDIAA MIGAHCDQTQ NPIDNIVAGG  660
LHSHTNFING PADGSLTFPF TLGAGVLDYR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.256400.0callus| leaf| panicle| seed| stem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329775930.0
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0675750.0AK067575.1 Oryza sativa Japonica Group cDNA clone:J013110M05, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015647776.10.0protein FAR1-RELATED SEQUENCE 5 isoform X1
TrEMBLA2YMN70.0A2YMN7_ORYSI; Uncharacterized protein
STRINGOS07T0563600-010.0(Oryza sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1832967
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.13e-32FAR1-related sequence 5