PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

BGIOSGA025137-PA

Common Name

OsI_24867

Organism

Oryza sativa subsp. indica

Taxonomic ID

39946

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa

Family

bHLH

Protein Properties

Length: 593aa MW: 63932.9 Da PI: 7.7193

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
BGIOSGA025137-PA	genome	RIS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	55.8	8e-18	408	454	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 hn ErrRRdriN+++ L+el+P++ K +Ka+iL +A+eY+ksLq BGIOSGA025137-PA 408 VHNLSERRRRDRINEKLRALQELVPHC-----NKTDKASILDEAIEYLKSLQ 454 6***********************8.....6****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	7.18E-16	400	458	No hit	No description
SuperFamily	SSF47459	2.62E-21	402	469	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	18.768	404	453	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	3.6E-15	408	454	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.2E-21	408	462	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	4.3E-18	410	459	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 593 aa Download sequence Send to blast
MKLLGTQDGP ASSRSRVRDV MLPRRDAPPP PPTSSLRALA ARVQARRRTY HCSSSPLWVG 60 SRRIVIVIEE PTALDKLKLT RSASEKTVLT LIRSTKSSPP LSNLDSRSRE AHRQCRLDLL 120 KRIHLTLLPR HSHFLSTSKR SKKNEVRSVK CDLPAVEELR RHGCGCNCKV VVVVGDDDEP 180 EEALAIGGFR SVCLRGVSSA WRAGGSSCGR HGGVVAHAQT RHRSSDVLAR SGVTGEEETA 240 SAWFADGGGG GGGDDDALGL GMGRDIYSQL WHSFANVDGH AAGALALATP TPTPRAAARS 300 DDVSSRLDEA DLSICGSNAV VAPALPADDD DDIDAAAPRE EEEEEEEGPG AARAAGASSS 360 GGSGSGSGSY PLFKRGREEL VDSLSEVADE TRPSKRPAAK RRTRAAEVHN LSERRRRDRI 420 NEKLRALQEL VPHCNKTDKA SILDEAIEYL KSLQMQVQIM WMTTGIVPMM FPGTHQLMPP 480 MGMGLNTACM PGAQAQGLNQ MQRTTYYMNN SLPNQMPQIP SPAMNAPSVP DDMQNDNRIR 540 GPRNPFLHCN DTLTATAQVP GLFTYGSQIA EQNEIQELLS GAVIPSSSDG TIK

Sequence ? help Back to Top

Protein Sequence Length: 593 aa Download sequence Send to blast

MKLLGTQDGP ASSRSRVRDV MLPRRDAPPP PPTSSLRALA ARVQARRRTY HCSSSPLWVG  60
SRRIVIVIEE PTALDKLKLT RSASEKTVLT LIRSTKSSPP LSNLDSRSRE AHRQCRLDLL  120
KRIHLTLLPR HSHFLSTSKR SKKNEVRSVK CDLPAVEELR RHGCGCNCKV VVVVGDDDEP  180
EEALAIGGFR SVCLRGVSSA WRAGGSSCGR HGGVVAHAQT RHRSSDVLAR SGVTGEEETA  240
SAWFADGGGG GGGDDDALGL GMGRDIYSQL WHSFANVDGH AAGALALATP TPTPRAAARS  300
DDVSSRLDEA DLSICGSNAV VAPALPADDD DDIDAAAPRE EEEEEEEGPG AARAAGASSS  360
GGSGSGSGSY PLFKRGREEL VDSLSEVADE TRPSKRPAAK RRTRAAEVHN LSERRRRDRI  420
NEKLRALQEL VPHCNKTDKA SILDEAIEYL KSLQMQVQIM WMTTGIVPMM FPGTHQLMPP  480
MGMGLNTACM PGAQAQGLNQ MQRTTYYMNN SLPNQMPQIP SPAMNAPSVP DDMQNDNRIR  540
GPRNPFLHCN DTLTATAQVP GLFTYGSQIA EQNEIQELLS GAVIPSSSDG TIK

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	399	416	KRRTRAAEVHNLSERRRR
2	412	417	ERRRRD

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Os.44516	0.0	leaf\| panicle\| stem

Expression -- Microarray ? help Back to Top
Source	ID	E-value
GEO	32970263	0.0

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Highly expressed in the node portions of the stem. Expressed in the leaves and the basal part of shoots. {ECO:0000269\|PubMed:22984180}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that may act as negative regulator of phyB-dependent light signal transduction (PubMed:17485859). Transcription activator that acts as positive regulator of internode elongation. May function via regulation of cell wall-related genes. May play a role in a drought-associated growth-restriction mechanism in response to drought stress (PubMed:22984180). {ECO:0000269\|PubMed:17485859, ECO:0000269\|PubMed:22984180}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by light in dark-grown etiolated seedlings (PubMed:17485859). Circadian oscillation under 12 h light/12 h dark cycle conditions, with peaks in the middle of the light period (PubMed:17485859, PubMed:22984180). Down-regulated by cold and drought stresses (PubMed:22984180). {ECO:0000269\|PubMed:17485859, ECO:0000269\|PubMed:22984180}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	JN400276	0.0	JN400276.1 Oryza sativa Japonica Group rice phytochrome-interacting factor 4 (PIF4) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015648043.1	0.0	transcription factor PHYTOCHROME INTERACTING FACTOR-LIKE 13-like isoform X1
Refseq	XP_015648044.1	0.0	transcription factor PHYTOCHROME INTERACTING FACTOR-LIKE 13-like isoform X1
Refseq	XP_015648045.1	0.0	transcription factor PHYTOCHROME INTERACTING FACTOR-LIKE 13-like isoform X1
Swissprot	Q10CH5	1e-82	PIL13_ORYSJ; Transcription factor PHYTOCHROME INTERACTING FACTOR-LIKE 13
TrEMBL	B8B765	0.0	B8B765_ORYSI; Uncharacterized protein
STRING	OS07T0143200-00	0.0	(Oryza sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3174	34	82

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G09530.2	3e-27	phytochrome interacting factor 3

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Nakamura Y,Kato T,Yamashino T,Murakami M,Mizuno T Characterization of a set of phytochrome-interacting factor-like bHLH proteins in Oryza sativa. Biosci. Biotechnol. Biochem., 2007. 71(5): p. 1183-91 [PMID:17485859] Zhao XL,Shi ZY,Peng LT,Shen GZ,Zhang JL An atypical HLH protein OsLF in rice regulates flowering time and interacts with OsPIL13 and OsPIL15. N Biotechnol, 2011. 28(6): p. 788-97 [PMID:21549224] Todaka D, et al. Rice phytochrome-interacting factor-like protein OsPIL1 functions as a key regulator of internode elongation and induces a morphological response to drought stress. Proc. Natl. Acad. Sci. U.S.A., 2012. 109(39): p. 15947-52 [PMID:22984180]