PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa

Family

WRKY

Protein Properties

Length: 288aa MW: 30215.8 Da PI: 6.5049

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
BGIOSGA024948-PA	genome	RIS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	106.7	1.2e-33	122	179	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 +Dgy+WrKYGqK vk+s+fprsYYrCt ++C+vkk+vers++dp+vv++tYeg+H h+ BGIOSGA024948-PA 122 EDGYRWRKYGQKAVKNSPFPRSYYRCTNSKCTVKKRVERSSDDPSVVITTYEGQHSHH 179 8********************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	2.6E-34	106	180	IPR003657	WRKY domain
SuperFamily	SSF118290	7.19E-29	113	179	IPR003657	WRKY domain
PROSITE profile	PS50811	30.079	116	181	IPR003657	WRKY domain
SMART	SM00774	3.4E-39	121	180	IPR003657	WRKY domain
Pfam	PF03106	5.8E-27	122	179	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009414	Biological Process	response to water deprivation
GO:0009651	Biological Process	response to salt stress
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 288 aa Download sequence Send to blast
MAGAGDWPFA ADEAYADSSA IFAELGWANG LAVVDAVGEL LPPLDPPGEL ATPPPPPLDL 60 PETPAGSSAD GAASSCSTDD ADGGKPAAAS TEAASKSLTP GKKRARQPRF AFMTKSEIDH 120 LEDGYRWRKY GQKAVKNSPF PRSYYRCTNS KCTVKKRVER SSDDPSVVIT TYEGQHSHHT 180 VTFPRAAATA AGFSHIHAMA ALAAAPFSAH QQLYSNLQPP PPTMPLAATT PASSSSLLQL 240 PLHCNHELQV VASCGGYPSS SSSPPASVLP VDKGLLDDMV PRAMRHDG

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wj2_A	1e-26	111	178	7	74	Probable WRKY transcription factor 4
2lex_A	1e-26	111	178	7	74	Probable WRKY transcription factor 4
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Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Os.38985	0.0	callus\| leaf
Os.42490	0.0	callus\| flower\| leaf\| panicle\| root\| seed\| stem

Expression -- Microarray ? help Back to Top
Source	ID	E-value
GEO	33519203	0.0

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00067	PBM	Transfer from AT1G69310	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK240958	0.0	AK240958.1 Oryza sativa Japonica Group cDNA, clone: J065045F23, full insert sequence.
GenBank	AY341858	0.0	AY341858.1 Oryza sativa (japonica cultivar-group) WRKY18 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015645717.1	0.0	probable WRKY transcription factor 57
TrEMBL	A2YHH2	0.0	A2YHH2_ORYSI; Uncharacterized protein
TrEMBL	Q6IEQ2	0.0	Q6IEQ2_ORYSJ; WRKY transcription factor 29
TrEMBL	Q8H5U1	0.0	Q8H5U1_ORYSJ; Os07g0111400 protein
STRING	OS07T0111400-00	0.0	(Oryza sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2125	37	96

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69310.2	3e-53	WRKY DNA-binding protein 57