PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa

Family

SBP

Protein Properties

Length: 216aa MW: 22044.3 Da PI: 10.8356

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
BGIOSGA024253-PA	genome	RIS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	131.7	2.5e-41	109	186	1	78
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +Cqve+C +dlsea +y+rrhkvC++hsk pvvlv+gl+qrfCqqCsrfhel+efD++krsCrrrLa+hnerrrk++a BGIOSGA024253-PA 109 RCQVERCGVDLSEAGRYNRRHKVCQTHSKEPVVLVAGLRQRFCQQCSRFHELTEFDDAKRSCRRRLAGHNERRRKSAA 186 6**************************************************************************975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.1100.10	9.3E-34	103	171	IPR004333	Transcription factor, SBP-box
PROSITE profile	PS51141	31.351	107	184	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF103612	5.1E-38	108	188	IPR004333	Transcription factor, SBP-box
Pfam	PF03110	1.2E-31	110	183	IPR004333	Transcription factor, SBP-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0010321	Biological Process	regulation of vegetative phase change
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 216 aa Download sequence Send to blast
MDRKDKARKN FSSSSSSSAA SMAALAAAAA AGDGGAALPS PMEEDKKPRL VASSLAPVAG 60 GGGGGSSSSA AVAAGASSSS SSSSVAAAAR RGAGRAGGGA PSGGGGGPRC QVERCGVDLS 120 EAGRYNRRHK VCQTHSKEPV VLVAGLRQRF CQQCSRFHEL TEFDDAKRSC RRRLAGHNER 180 RRKSAADTAH GENCRHADQD AGRSHQGTGN PPFQIR

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ul4_A	1e-35	102	183	3	84	squamosa promoter binding protein-like 4
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Os.77550	0.0	panicle
Os.78910	0.0	panicle

Expression -- Microarray ? help Back to Top
Source	ID	E-value
GEO	156764682	0.0

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Ubiquitous. {ECO:0000269\|PubMed:16861571}.

Functional Description ? help Back to Top
Source	Description
UniProt	Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May be involved in panicle development. {ECO:0000250}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Negatively regulated by microRNAs miR156b and miR156h. {ECO:0000305\|PubMed:16861571}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KT899581	0.0	KT899581.1 Oryza sativa Japonica Group isolate Dongjing GLW7 (GLW7) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015645415.1	1e-151	squamosa promoter-binding-like protein 13
Swissprot	Q6Z461	1e-152	SPL13_ORYSJ; Squamosa promoter-binding-like protein 13
TrEMBL	A0A0E0I1A6	1e-149	A0A0E0I1A6_ORYNI; Uncharacterized protein
TrEMBL	A0A0E0Q8R1	1e-149	A0A0E0Q8R1_ORYRU; Uncharacterized protein
TrEMBL	B8B6F8	1e-149	B8B6F8_ORYSI; Uncharacterized protein
TrEMBL	C7J4X6	1e-149	C7J4X6_ORYSJ; GLW7
STRING	ORUFI07G16070.1	1e-150	(Oryza rufipogon)
STRING	ONIVA07G14170.1	1e-150	(Oryza nivara)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP8524	32	48

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G53160.2	2e-37	squamosa promoter binding protein-like 4