PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

BGIOSGA024182-PA

Common Name

OsI_26302

Organism

Oryza sativa subsp. indica

Taxonomic ID

39946

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa

Family

FAR1

Protein Properties

Length: 328aa MW: 37053.2 Da PI: 5.2833

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
BGIOSGA024182-PA	genome	RIS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	84.7	1.4e-26	226	320	2	90
FAR1 2 fYneYAkevGFsvrkskskks...krngeitkrtfvCskegkreeekkk....tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnH 87 f+n+YA+ +GFs+++++s k+ krn+e++k+t++C+++gk++++ ++ ++ +r+t++ rt+Ck+ ++v+++ +g w v++l+l+HnH BGIOSGA024182-PA 226 FFNFYAYLIGFSIVIAHSLKTsdkKRNNEVIKYTYKCNRHGKNQDNATNqvqkKKGTRNTNVLLRTDCKCVMVVREN-NGIWSVIRLDLNHNH 317 9**************9988888999***************9996665566677999*********99.************* PP FAR1 88 ela 90 +l+ BGIOSGA024182-PA 318 NLC 320 *98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	8.2E-26	226	320	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 328 aa Download sequence Send to blast
MEIAEKSRQK ELESAQEKNT MGNPTISTTK DFSSEKQIAK SIQMEESTNP RANLSSAGTN 60 SPEIAYGGQM LHEEYALLSS QTKLGQQMSY TALMQQVIQS QSPKINLHTN QGRLAEMNYH 120 LQSPIGYSNS MILTTNRCID NFDQAVLEAK QEVQVQITST ENSTLEQVNG AVQAGIASTE 180 DNAEMTDKEN KESAADEEEA DNDEIDSRHI PCEGMQFKTD DEAYTFFNFY AYLIGFSIVI 240 AHSLKTSDKK RNNEVIKYTY KCNRHGKNQD NATNQVQKKK GTRNTNVLLR TDCKCVMVVR 300 ENNGIWSVIR LDLNHNHNLC LPEERKFL

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	CP012615	0.0	CP012615.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 7 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A2YM49	0.0	A2YM49_ORYSI; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP15170	7	9

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G22170.2	4e-10	far-red elongated hypocotyls 3