PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

BGIOSGA023706-PA

Common Name

OsI_27350, WRKY47

Organism

Oryza sativa subsp. indica

Taxonomic ID

39946

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa

Family

WRKY

Protein Properties

Length: 334aa MW: 34963.7 Da PI: 6.7806

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
BGIOSGA023706-PA	genome	RIS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	74.3	1.6e-23	123	184	2	59
--SS-EEEEEEE--TT-S.S-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgse.fprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 +Dg +WrKYGqK++++s+ +prsYYrCt++ gC+++k+v++s+++ + ++i Y geH+++ BGIOSGA023706-PA 123 EDGRQWRKYGQKHIQDSPnNPRSYYRCTHRpdqGCMATKQVQTSESNSSEFVISYYGEHTCR 184 89************9736*****9999************************996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	7.7E-25	108	186	IPR003657	WRKY domain
SuperFamily	SSF118290	6.54E-23	115	186	IPR003657	WRKY domain
PROSITE profile	PS50811	20.346	117	186	IPR003657	WRKY domain
SMART	SM00774	3.4E-34	122	185	IPR003657	WRKY domain
Pfam	PF03106	7.6E-23	123	184	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 334 aa Download sequence Send to blast
MASPDGGVGD GGAEPHEVMD DLLEMREQAA MLHSMLHGTS PSSCAAAAST RQLNQLIDGV 60 MSRLQSSSLS VMSPGGGGGG RRGSGGRKKK GAKAVAGPHR RSSSGRRRSK SPFVRMVTTK 120 ELEDGRQWRK YGQKHIQDSP NNPRSYYRCT HRPDQGCMAT KQVQTSESNS SEFVISYYGE 180 HTCRDPSTIP FVVEAEAPAA DYANLISFGS SGGASTSRVD PLRQSRHRLM AEAVDPTPSC 240 SFANCHSPVL SSECASEAAA LSSSLPLSAV VGSAVTTPST SIVGSAPADY DWPSGLAGGD 300 MAGSFPSSPS SLGFMTGSFG NLPGDDDDMF GFDP

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6ir8_A	2e-20	117	184	3	69	OsWRKY45
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Os.11321	0.0	leaf\| panicle\| root

Expression -- Microarray ? help Back to Top
Source	ID	E-value
GEO	32996109	0.0

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK110900	0.0	AK110900.1 Oryza sativa Japonica Group cDNA clone:002-173-B01, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015646872.1	0.0	probable WRKY transcription factor 70
Refseq	XP_015646873.1	0.0	probable WRKY transcription factor 70
TrEMBL	Q6IEN4	0.0	Q6IEN4_ORYSI; WRKY transcription factor 47
STRING	ORUFI07G27440.1	0.0	(Oryza rufipogon)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP12527	28	37

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G46400.1	1e-19	WRKY DNA-binding protein 46

Publications ? help Back to Top
Zhang ZL, et al. A rice WRKY gene encodes a transcriptional repressor of the gibberellin signaling pathway in aleurone cells. Plant Physiol., 2004. 134(4): p. 1500-13 [PMID:15047897]