PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA023706-PA
Common NameOsI_27350, WRKY47
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family WRKY
Protein Properties Length: 334aa    MW: 34963.7 Da    PI: 6.7806
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA023706-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY74.31.6e-23123184259
                       --SS-EEEEEEE--TT-S.S-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
              WRKY   2 dDgynWrKYGqKevkgse.fprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                       +Dg +WrKYGqK++++s+ +prsYYrCt++   gC+++k+v++s+++ + ++i Y geH+++
  BGIOSGA023706-PA 123 EDGRQWRKYGQKHIQDSPnNPRSYYRCTHRpdqGCMATKQVQTSESNSSEFVISYYGEHTCR 184
                       89**************9736*********9999**************************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.807.7E-25108186IPR003657WRKY domain
SuperFamilySSF1182906.54E-23115186IPR003657WRKY domain
PROSITE profilePS5081120.346117186IPR003657WRKY domain
SMARTSM007743.4E-34122185IPR003657WRKY domain
PfamPF031067.6E-23123184IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 334 aa     Download sequence    Send to blast
MASPDGGVGD GGAEPHEVMD DLLEMREQAA MLHSMLHGTS PSSCAAAAST RQLNQLIDGV  60
MSRLQSSSLS VMSPGGGGGG RRGSGGRKKK GAKAVAGPHR RSSSGRRRSK SPFVRMVTTK  120
ELEDGRQWRK YGQKHIQDSP NNPRSYYRCT HRPDQGCMAT KQVQTSESNS SEFVISYYGE  180
HTCRDPSTIP FVVEAEAPAA DYANLISFGS SGGASTSRVD PLRQSRHRLM AEAVDPTPSC  240
SFANCHSPVL SSECASEAAA LSSSLPLSAV VGSAVTTPST SIVGSAPADY DWPSGLAGGD  300
MAGSFPSSPS SLGFMTGSFG NLPGDDDDMF GFDP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A2e-20117184369OsWRKY45
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.113210.0leaf| panicle| root
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329961090.0
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1109000.0AK110900.1 Oryza sativa Japonica Group cDNA clone:002-173-B01, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015646872.10.0probable WRKY transcription factor 70
RefseqXP_015646873.10.0probable WRKY transcription factor 70
TrEMBLQ6IEN40.0Q6IEN4_ORYSI; WRKY transcription factor 47
STRINGORUFI07G27440.10.0(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP125272837
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46400.11e-19WRKY DNA-binding protein 46
Publications ? help Back to Top
  1. Zhang ZL, et al.
    A rice WRKY gene encodes a transcriptional repressor of the gibberellin signaling pathway in aleurone cells.
    Plant Physiol., 2004. 134(4): p. 1500-13
    [PMID:15047897]