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Plant Transcription
Factor Database
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Transcription Factor Information
|
Basic
Information? help
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| TF ID |
BGIOSGA023624-PA |
| Common Name | OsI_24504 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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| Family |
bHLH |
| Protein Properties |
Length: 324aa MW: 35287 Da PI: 4.6055 |
| Description |
bHLH family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| BGIOSGA023624-PA | genome | RIS | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | HLH | 35.4 | 1.9e-11 | 158 | 200 | 7 | 54 |
HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
HLH 7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54
++ErrRR+r+N++++ Lr+++Pk + K++ +iL +++Y+k+L
BGIOSGA023624-PA 158 MAERRRRKRLNDRLSMLRSVVPKiS------KMDRTSILGDTIDYMKEL 200
79*********************66......****************98 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 324 aa
Download sequence Send
to blast |
MELDEQAFLE ELFSLRRDAW EYNAMGDFFS PACAAMDGFQ ERHQSTTTVS VLPTFTASYE 60
QPPPAPAAGF DCLSEVYGNA AAAFGPNAGG GGGEYGGGGD MGFLDVVEPK ASMVVDGGGL 120
GVCKVEPGLQ AEGGFSAAAA APASKKKRVE GMPSKNLMAE RRRRKRLNDR LSMLRSVVPK 180
ISKMDRTSIL GDTIDYMKEL LERIRQLQEE IEEQQQQETP GVLSVFRELN PNEMLARNTP 240
KFDVERKEGG DTRVEIYCAA KPGLLLSTVS TLETLGLDIQ QCVVSCFNDF GMHASCSEMQ 300
RERMSADMIK QELFKNAGYG GGCL
|
| Nucleic Localization
Signal ? help
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 |
| No. |
Start |
End |
Sequence |
| 1 | 145 | 165 | KKRVEGMPSKNLMAERRRRKR |
| 2 | 159 | 166 | ERRRRKRL |
| Expression --
Description ? help
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| Source |
Description |
| Uniprot | TISSUE SPECIFICITY: Broadly expressed. {ECO:0000269|PubMed:17088607}. |
| Functional Description ? help
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| Source |
Description |
| UniProt | Transcription factor. May be involved in the differentiation of stomatal guard cells. {ECO:0000269|PubMed:17088607}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AK063523 | 0.0 | AK063523.1 Oryza sativa Japonica Group cDNA clone:001-116-H12, full insert sequence. |
| GenBank | AP003685 | 0.0 | AP003685.3 Oryza sativa Japonica Group genomic DNA, chromosome 6, PAC clone:P0548E04. |
| GenBank | AP007231 | 0.0 | AP007231.2 Oryza sativa Japonica Group genomic DNA, chromosome 6, PAC clone:P0535F09. |
| GenBank | AP014962 | 0.0 | AP014962.1 Oryza sativa Japonica Group DNA, chromosome 6, cultivar: Nipponbare, complete sequence. |
| GenBank | CP012614 | 0.0 | CP012614.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 6 sequence. |
| Publications
? help Back to Top |
- Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
Differentiation, 2010. 80(1): p. 1-8
[PMID:20219281] - Ding Y, et al.
Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
BMC Plant Biol., 2013. 13: p. 229
[PMID:24377444] - Sharma N, et al.
NO FLOWERING IN SHORT DAY (NFL) is a bHLH transcription factor that promotes flowering specifically under short-day conditions in Arabidopsis.
Development, 2016. 143(4): p. 682-90
[PMID:26758694] - Chen YS, et al.
Two MYB-related transcription factors play opposite roles in sugar signaling in Arabidopsis.
Plant Mol. Biol., 2017. 93(3): p. 299-311
[PMID:27866313] - Ezer D, et al.
The G-Box Transcriptional Regulatory Code in Arabidopsis.
Plant Physiol., 2017. 175(2): p. 628-640
[PMID:28864470]
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