PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA023322-PA
Common NameOsI_23819
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family ERF
Protein Properties Length: 419aa    MW: 43544.8 Da    PI: 10.9454
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA023322-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP223.51.4e-071541822755
               AP2  27 krkrfslgkfgtaeeAakaaiaarkkleg 55 
                       ++ r++lg+fgtaeeAa a++ a+  ++g
  BGIOSGA023322-PA 154 VKERVWLGTFGTAEEAAWAYDTAATVIHG 182
                       568********************977765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103214.21112190IPR001471AP2/ERF domain
SMARTSM003807.7E-7136196IPR001471AP2/ERF domain
SuperFamilySSF541713.33E-11147190IPR016177DNA-binding domain
CDDcd000181.89E-12147190No hitNo description
Gene3DG3DSA:3.30.730.107.0E-15154191IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 419 aa     Download sequence    Send to blast
MGRPVKQKTT TWLVELLREY CQRAAAQATA GNGAVAAAAA VEGEINTDGL AALAAEAEGF  60
AAAAAAAVEG EINTEGLAAL AAEAEGFAAA NGEGWVGRPS RERERVSTGR RLWRGEEGLT  120
AELRWRRRGS TGGRGRGRGG STRRRSASAT RTGVKERVWL GTFGTAEEAA WAYDTAATVI  180
HGDKATTNFP RAPLRPATTP VMRSMLVFFG IAHLVRSLVP RARGPRGRGG GAGGRGRSRR  240
RRAAAAAAPS APTSEAPSPP PPSSALVPEP ELQVQGGRGE RGRGRGRGRG GGRGGRRGRG  300
RTPARVVAED SPMLQATTPA AAPAPAPALA PAPANQAIFQ PMIIPPGGVV VAPDDFLLSA  360
ISDDEPVLPH KKPKLLGVYT PPDSPDQFVM EFFADLGDGD DILSSSFWQD PAGDGEDTQ
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1284293RGRGRGGGRG
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126140.0CP012614.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 6 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA2YFD30.0A2YFD3_ORYSI; Uncharacterized protein
STRINGORUFI06G23690.11e-144(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1823699