PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA022898-PA
Common NameOsI_22927
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family FAR1
Protein Properties Length: 461aa    MW: 53651.6 Da    PI: 8.0238
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA022898-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR149.61.3e-15590291
              FAR1  2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek..dgk..wevtkleleHnHelap 91
                      fYn+Y +++GF+vrks+s+          r+ +Cskegk++ + ++ +k++r+r + r+gC+a ++v++     ++   + ++++ +HnH+l+p
  BGIOSGA022898-PA  5 FYNKYVEHAGFNVRKSRSRAA-------YREICCSKEGKNKYRGDE-TKRERRRGSARIGCRAYVRVRNVVieGEVvsVVFDDVVVQHNHPLTP 90
                      9***************98877.......7899************99.9999999**************99863222112346788******986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031016.2E-11590IPR004330FAR1 DNA binding domain
PfamPF105518.6E-32212303IPR018289MULE transposase domain
Sequence ? help Back to Top
Protein Sequence    Length: 461 aa     Download sequence    Send to blast
MAYAFYNKYV EHAGFNVRKS RSRAAYREIC CSKEGKNKYR GDETKRERRR GSARIGCRAY  60
VRVRNVVIEG EVVSVVFDDV VVQHNHPLTP SPSAVKHMRS HKQRGDTLIE FVDTMQQCRE  120
PQSSIMGVLS DMHGDRESIP FTTRDLENRK AANVREGNAD DISKLLRFFN ECKKDNPKFY  180
WDIRTDEEGV VKNVFWSHAS MQAEYADFGD AITFDTTYKT NIYGMPLAMF VGANHHLQST  240
LFGCALLRDE RAESFEWLFE TFKNCMGDCP TPRCILTDQD TAMAIAVGRA FPETIHRLCR  300
WHIIDGHSDH LNTIFMRHKD IETEMMEDYC GHMTSTQRSE SFNRLVKSSF VDHQTALHRF  360
ARRILEVVLS RKEKEAAETR ACQDVPNVKT AWPFAEQLSR VYTRAVFKVF ENTLDESVHF  420
RIEQYGVDQT QWIISHSKRS EKHDWCQRQF KRGNHIVNAD Q
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.788250.0panicle
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO1154680750.0
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL8448750.0AL844875.4 Oryza sativa chromosome 12, . BAC OSJNBb0032I14 of library OSJNBb from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence.
GenBankAP0149680.0AP014968.1 Oryza sativa Japonica Group DNA, chromosome 12, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015612933.10.0protein FAR1-RELATED SEQUENCE 5 isoform X1
RefseqXP_015612934.10.0protein FAR1-RELATED SEQUENCE 5 isoform X2
TrEMBLB8B2050.0B8B205_ORYSI; Uncharacterized protein
STRINGOS10T0381800-021e-137(Oryza sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP76091043
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.11e-59FAR1-related sequence 5