|
Plant Transcription
Factor Database
|
Transcription Factor Information
Basic
Information? help
Back to Top |
TF ID |
BGIOSGA022872-PA |
Common Name | OsI_22880 |
Organism |
|
Taxonomic ID |
|
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
|
Family |
M-type_MADS |
Protein Properties |
Length: 77aa MW: 8595.81 Da PI: 10.2914 |
Description |
M-type_MADS family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
BGIOSGA022872-PA | genome | RIS | View CDS |
|
Signature Domain? help Back to Top |
|
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | SRF-TF | 88.4 | 3.9e-28 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
+rien++ rqvtfskRr g++KKA+EL +LCda+v v++fsstg+ly+ys+
BGIOSGA022872-PA 9 SRIENTTSRQVTFSKRRSGLFKKAKELAILCDAQVGVLVFSSTGRLYDYSN 59
59***********************************************95 PP
|
3D Structure ? help Back to Top |
|
PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
1tqe_P | 2e-15 | 1 | 66 | 1 | 66 | Myocyte-specific enhancer factor 2B |
1tqe_Q | 2e-15 | 1 | 66 | 1 | 66 | Myocyte-specific enhancer factor 2B |
1tqe_R | 2e-15 | 1 | 66 | 1 | 66 | Myocyte-specific enhancer factor 2B |
1tqe_S | 2e-15 | 1 | 66 | 1 | 66 | Myocyte-specific enhancer factor 2B |
6c9l_A | 2e-15 | 1 | 66 | 1 | 66 | Myocyte-specific enhancer factor 2B |
6c9l_B | 2e-15 | 1 | 66 | 1 | 66 | Myocyte-specific enhancer factor 2B |
6c9l_C | 2e-15 | 1 | 66 | 1 | 66 | Myocyte-specific enhancer factor 2B |
6c9l_D | 2e-15 | 1 | 66 | 1 | 66 | Myocyte-specific enhancer factor 2B |
6c9l_E | 2e-15 | 1 | 66 | 1 | 66 | Myocyte-specific enhancer factor 2B |
6c9l_F | 2e-15 | 1 | 66 | 1 | 66 | Myocyte-specific enhancer factor 2B |
Search in ModeBase |
Expression --
Description ? help
Back to Top |
Source |
Description |
Uniprot | TISSUE SPECIFICITY: Specifically expressed in roots, mostly in lateral roots (LR) primordia, young emerging LRs, apex and base of LRs, apex of the primary root, and in the stele. Barely detectable in shoots. {ECO:0000269|PubMed:12837945, ECO:0000269|PubMed:16021502, ECO:0000269|PubMed:17148611, ECO:0000269|PubMed:9430595}. |
Functional Description ? help
Back to Top |
Source |
Description |
UniProt | Probable transcription factor. Required for root plasticity in response to nitrate, NO(3)(-). Promotes lateral root growth in a NRT1.1-dependent manner. {ECO:0000269|PubMed:15667327, ECO:0000269|PubMed:17148611, ECO:0000269|PubMed:9430595}. |
Regulation -- Description ? help
Back to Top |
Source |
Description |
UniProt | INDUCTION: Induced by nitrate in root cell culture, (PubMed:9430595, PubMed:17148611). In roots, seems induced by nitrogen (N) deprivation (e.g. nitrate free medium) but rapidly repressed by N re-supply (e.g. nitrate, glutamine and ammonium) (PubMed:16021502). Slight repression in shoots during nitrogen (N) deprivation. {ECO:0000269|PubMed:16021502, ECO:0000269|PubMed:17148611, ECO:0000269|PubMed:9430595}. |
Annotation --
Nucleotide ? help
Back to Top |
Source |
Hit ID |
E-value |
Description |
GenBank | AP005646 | 5e-97 | AP005646.2 Oryza sativa Japonica Group genomic DNA, chromosome 6, BAC clone:B1077E08. |
GenBank | AP014962 | 5e-97 | AP014962.1 Oryza sativa Japonica Group DNA, chromosome 6, cultivar: Nipponbare, complete sequence. |
GenBank | CP012614 | 5e-97 | CP012614.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 6 sequence. |
Publications
? help Back to Top |
- Heyndrickx KS,Vandepoele K
Systematic identification of functional plant modules through the integration of complementary data sources. Plant Physiol., 2012. 159(3): p. 884-901 [PMID:22589469] - Yan Y,Wang H,Hamera S,Chen X,Fang R
miR444a has multiple functions in the rice nitrate-signaling pathway. Plant J., 2014. 78(1): p. 44-55 [PMID:24460537] - Lei L, et al.
Nitrogen use efficiency is regulated by interacting proteins relevant to development in wheat. Plant Biotechnol. J., 2018. 16(6): p. 1214-1226 [PMID:29193541] - Sun CH, et al.
Chrysanthemum MADS-box transcription factor CmANR1 modulates lateral root development via homo-/heterodimerization to influence auxin accumulation in Arabidopsis. Plant Sci., 2018. 266: p. 27-36 [PMID:29241564]
|