PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA022687-PA
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family bHLH
Protein Properties Length: 494aa    MW: 53504.8 Da    PI: 6.9839
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA022687-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH28.82.3e-09326374355
                       HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
               HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                        +h+ +Er RR++i +++  L++l+P +    sk   Ka +L + ++Y++sLq
  BGIOSGA022687-PA 326 NSHSLAERVRREKISERMKYLQDLVPGC----SKVTGKAVMLDEIINYVQSLQ 374
                       58*************************9....556*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.35E-10321378No hitNo description
SuperFamilySSF474595.23E-17321391IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.516323373IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.109.9E-17324388IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.6E-6326374IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.4E-10329379IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 494 aa     Download sequence    Send to blast
MGKRERGDTK QKEDVGLWIR PLRGKEKVRV LGGGCSCGRP LISPCDRRFW SSGSEKEMNE  60
KDATDLEERS EASEHGQALS FHGGAMFLQE AQIASPAAAN NALTSMANPF PIPPGLWNPP  120
SHNMGLGETS FSSLLGMLSA GAPPPFVATP GFVDSTAGFP CYNGGNLGAM INHPFPGIHQ  180
PLGDFQNGVE PCREIEDIEI EGSKNVSQTG EKQQGDGETT HAVDSSSKEL SMPGRNGGAG  240
HDEGTRVSCS KKRKRSGQDG GVKHAEGGEQ LATVGSAQKN EDDEKGEPKR SSVASGKSSG  300
KQIKDNAGSP KEDYIHVRAR RGQATNSHSL AERVRREKIS ERMKYLQDLV PGCSKVTGKA  360
VMLDEIINYV QSLQRQVEFL SMKLASVNPT LDFNIERILS KDIFQCRGTT ASSAFGFFPD  420
IVHPRLHPPK YTQVGMPSIV NPTDAFGRVI HAPLGTNSAF KEPKHQMPNN LNGEFQDVIE  480
MPFTHDHHGS NDQP
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1250255KKRKRS
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.325260.0callus| flower| leaf| panicle| seed| stem| vegetative meristem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329890620.0
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1038530.0AK103853.1 Oryza sativa Japonica Group cDNA clone:J033148M07, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015643533.10.0transcription factor bHLH49 isoform X2
RefseqXP_015643534.10.0transcription factor bHLH49 isoform X2
TrEMBLB9FSQ60.0B9FSQ6_ORYSJ; Uncharacterized protein
STRINGOS06T0275600-010.0(Oryza sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP146241923
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68920.31e-70bHLH family protein