PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA022649-PA
Common NameOsI_22425
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family MYB
Protein Properties Length: 278aa    MW: 30808.8 Da    PI: 4.8629
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA022649-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding50.64.3e-161461148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                      +g+WT+eEd++lv     +G  +W+ +++  g+ R++k+c++rw +yl
  BGIOSGA022649-PA 14 KGPWTAEEDQKLVAFLLTHGHCCWRVVPKLAGLLRCGKSCRLRWTNYL 61
                      79******************************99************97 PP
2Myb_DNA-binding53.36.5e-1771111547
                       -HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
   Myb_DNA-binding   5 TteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                       + +E+ l +d+++qlG++ W++Ia++++ gRt++++k++w+++
  BGIOSGA022649-PA  71 SDDEERLVIDLHAQLGNR-WSKIAARLP-GRTDNEIKNHWNTH 111
                       899***************.*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.607.5E-21562IPR009057Homeodomain-like
PROSITE profilePS5129414.227961IPR017930Myb domain
SuperFamilySSF466893.33E-2711108IPR009057Homeodomain-like
SMARTSM007177.3E-131363IPR001005SANT/Myb domain
PfamPF002492.3E-141461IPR001005SANT/Myb domain
CDDcd001671.65E-91661No hitNo description
PROSITE profilePS5129427.50362116IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.6E-2463116IPR009057Homeodomain-like
SMARTSM007172.5E-1566114IPR001005SANT/Myb domain
PfamPF002491.1E-1471111IPR001005SANT/Myb domain
CDDcd001678.97E-1271112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 278 aa     Download sequence    Send to blast
MGRQPCCDKV GLKKGPWTAE EDQKLVAFLL THGHCCWRVV PKLAGLLRCG KSCRLRWTNY  60
LRPDLKRGLL SDDEERLVID LHAQLGNRWS KIAARLPGRT DNEIKNHWNT HIKKKLRKMG  120
IDPVTHQPLE PPRPPPREQD ATPPPPPPEP PEQQRPPPPP PQEIEESEQE EQEPSPLIEP  180
HEITAPPPAA AAEAATSNCS VSPASVLSPS CSSSASAASA VDVAEWPEPM YMFGMDGIMD  240
VGWNGLISGA GVDVDVDVDP FDHYYHDASF DDQDVWII
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A5e-30121165108B-MYB
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.550960.0panicle
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO2844317950.0
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in chalaza of mature seeds, cotyledons, rosette leaves, cauline leaves, veins of stems, mature siliques, sepals and styles. Expressed at low levels in roots. {ECO:0000269|PubMed:23660402}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that acts as positive regulator of abscisic acid (ABA) signaling in response to salt stress. Acts as negative regulator ABI1, ABI2 and PP2CA, which are protein phosphatases 2C acting as negative regulator of ABA signaling. Binds to the DNA specific sequence and core element 5'-ACGT-3' found in the promoters of ABI1 and PP2CA to negatively regulate their expression during ABA-dependent salt stress response. {ECO:0000269|PubMed:23660402}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salt stress, drought stress and abscisic acid (ABA). Down-regulated by salicylic acid (SA) methyl jasmonate (JA). {ECO:0000269|PubMed:23660402}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126140.0CP012614.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 6 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006655982.11e-141PREDICTED: myb-related protein 308-like
SwissprotQ9C7U72e-84MYB20_ARATH; Transcription factor MYB20
TrEMBLA2YBF00.0A2YBF0_ORYSI; Uncharacterized protein
STRINGORUFI06G10280.11e-143(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP7938563
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66230.12e-81myb domain protein 20
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]