PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA022531-PA
Common NameOsI_22116
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family ERF
Protein Properties Length: 270aa    MW: 28330.5 Da    PI: 4.9522
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA022531-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP254.62.7e-1768116355
               AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                       ykGVr ++ +g+Wv+eIr ps+   ++r++lg++ tae Aa+a++aa ++l+g
  BGIOSGA022531-PA  68 YKGVRMRS-WGSWVSEIRAPSQ---KTRIWLGSYSTAEAAARAYDAALLCLKG 116
                       9****998.**********964...6************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.108.9E-2867125IPR001471AP2/ERF domain
SuperFamilySSF541711.11E-1767127IPR016177DNA-binding domain
PROSITE profilePS5103221.73367125IPR001471AP2/ERF domain
SMARTSM003809.0E-3267131IPR001471AP2/ERF domain
CDDcd000183.26E-1568126No hitNo description
PRINTSPR003676.9E-96879IPR001471AP2/ERF domain
PfamPF008472.0E-1068116IPR001471AP2/ERF domain
PRINTSPR003676.9E-990106IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 270 aa     Download sequence    Send to blast
MAEATSKCQT RHTHTEQQQQ QHQTARHNER SLAFQAIKRF DMVKTAASNG AAAARRVGGG  60
GDGKRAAYKG VRMRSWGSWV SEIRAPSQKT RIWLGSYSTA EAAARAYDAA LLCLKGSAAA  120
DLNFPVRLPF DLPAAAMSPK SIQRVAAAAA ANANANASSS CSAAVFAGVD DSGGASASEA  180
STPACSSSDG AASPSPVSSP ETVISDVDVD YSLLADIEAF FQSPKCMEYA MMDPCSAFFA  240
PPPPPAMAME EECGWEEEGD IALWSFSSLD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A3e-1258125472Ethylene-responsive transcription factor ERF096
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126140.0CP012614.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 6 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025881784.11e-163ethylene-responsive transcription factor ERF014
TrEMBLA0A0E0HML90.0A0A0E0HML9_ORYNI; Uncharacterized protein
TrEMBLA2YAJ90.0A2YAJ9_ORYSI; Uncharacterized protein
STRINGONIVA06G08290.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP31973469
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G44830.11e-23ERF family protein