 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
BGIOSGA022450-PA |
| Common Name | OsI_21979 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
|
| Family |
HB-other |
| Protein Properties |
Length: 438aa MW: 47777.7 Da PI: 6.4499 |
| Description |
HB-other family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| BGIOSGA022450-PA | genome | RIS | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Homeobox | 62.1 | 8.1e-20 | 57 | 111 | 3 | 57 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS
Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57
kR t++qle+Le+ + +++yp++++r+eL+ klgLt+rq ++WF+ rR k++k
BGIOSGA022450-PA 57 KRVMKTPYQLEVLERTYTEDPYPNETMRAELSVKLGLTDRQLQMWFCHRRLKDRK 111
8999*************************************************97 PP
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| Sequence ? help Back to Top |
| Protein Sequence Length: 438 aa
Download sequence Send
to blast |
MDSSGDGGDE GAGAAPAGVE EESPAPASPP APASASAPVP AAVGGGAGAS GSSGKVKRVM 60
KTPYQLEVLE RTYTEDPYPN ETMRAELSVK LGLTDRQLQM WFCHRRLKDR KPPPKRQQLE 120
EEVPVPVMAP PPVLPPPLPH SELTMGTGGM YGEPLLPPSS RRGTGRPSAV PRISASEVAR 180
RYYEPPQVML PPLAPMQLTR AEHRVIDSVE RLIGEPLRED GPVLGVEFDP LPPGAFGAPI 240
VPEQQRQPFR SYEAKMFSGH DTKHIKASAF LPSIDPFVPS TVSGKRKSMT GSSSHLGSRA 300
VREYQFIPEQ SSDIYERTTQ SRYYDVLTEA SDSRMSTGSR FLHGVEKAPG YTFHGQISGS 360
SHLSLHGRPP VFSSGSTDYE MDPSNINSSS VPNESQYGIP QVAGFENSVA PSDRMVYHDD 420
DAFRMERKRK VWFFTDFM
|
| Expression -- UniGene
? help Back to Top |
| UniGene ID |
E-value |
Expressed in |
| Os.14637 | 9e-97 | callus| flower| leaf| panicle| seed| stem |
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | AC113333 | 0.0 | AC113333.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone OJ1115_B06, complete sequence. |
| GenBank | AP014961 | 0.0 | AP014961.1 Oryza sativa Japonica Group DNA, chromosome 5, cultivar: Nipponbare, complete sequence. |
| GenBank | CP012614 | 0.0 | CP012614.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 6 sequence. |
