PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA022020-PA
Common NameOsI_21459
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family GRAS
Protein Properties Length: 618aa    MW: 66010 Da    PI: 6.4339
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA022020-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS390.22.3e-1192175951374
              GRAS   1 lvelLlecAeavssgdlelaqa.lLarlselaspdg.dpmqRlaayfteALaarlarsvselykalppsetsekn...sseelaalklfsevs 88 
                       lv++L++cA+ +s+g++e+a+  +Larl e+asp+g +pm+R+aayfteALa r++r++++++++ pp+e +++     ++ ++al++++ ++
  BGIOSGA022020-PA 217 LVRALTACADSLSAGNHEAANYyYLARLGEMASPAGpTPMHRVAAYFTEALALRVVRMWPHMFDIGPPRELTDDAfggGDDDAMALRILNAIT 309
                       6899****************9637************************************************9989999************** PP

              GRAS  89 PilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvl 181
                       Pi++f h+t N+ +l+++eg+ervH+iDfdi+qGlQWp Llq+La+R+ +p+++RiTgvg+    s++el+etg rLa++A++lg+ fef++ 
  BGIOSGA022020-PA 310 PIPRFLHFTLNERLLREFEGHERVHVIDFDIKQGLQWPGLLQSLAARAVPPAHVRITGVGE----SRQELQETGARLARVAAALGLAFEFHA- 397
                       *************************************************************....9**************************. PP

              GRAS 182 vakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadh.nsesFlerflealeyysalfdsl.e 272
                       v++rled++l++L+vk+gE++aVn+vl++hrll+++++l++    +L l +s+ ++++ + e+e    ns+++ +rf++al+yy+a fd++ +
  BGIOSGA022020-PA 398 VVDRLEDVRLWMLHVKRGECVAVNCVLAMHRLLRDDAALTD----FLGLARSTGATILLLGEHEGGGlNSGRWEARFARALRYYAAAFDAVdA 486
                       7************************************9999....*******************8777***********************99 PP

              GRAS 273 aklpreseerikvErellgreivnvvacegaerrerhetlekWrerlee.aGFkpvplsekaakqaklllrkvksdgyrveee.......sgs 357
                       a+lp++s +r+k E++ ++rei+n+va eg er+erhe+++ Wr+r+e+  GFk++ ++e++a+q +++ r+++ d y+v+ +        ++
  BGIOSGA022020-PA 487 AGLPEASPARAKAEEM-FAREIRNAVAFEGPERFERHESFAGWRRRMEDgGGFKNAGIGEREAMQGRMIARMFGPDKYTVQAHggggsggGEA 578
                       99**************.*******************************9679**********************888****888888886777 PP

              GRAS 358 lvlgWkdrpLvsvSaWr 374
                       l+l W d+pL++v+aW+
  BGIOSGA022020-PA 579 LTLRWLDQPLYTVTAWT 595
                       88**************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098553.111191568IPR005202Transcription factor GRAS
PfamPF035148.0E-117217595IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 618 aa     Download sequence    Send to blast
MLAGCSFSSS RHQMSTAQRF DILPCGFSKR GSRGDGAAPR VAGDARSGAT TCSFRTHPAP  60
PVTQSVSWGA KPEPGGNGNG AHRAVKRAHD EDAVEEYGPI VRAKRTRMGG DGDEVWFHQS  120
IAGTMQATAA GEGEEAEEEK VFLVPSAAAF PHGMAAAGPS LAAAKKEEYS KSPSDSSSSS  180
GTDGGSSAMM PPPQPPEFDA RNGVPAPGQA EREALELVRA LTACADSLSA GNHEAANYYY  240
LARLGEMASP AGPTPMHRVA AYFTEALALR VVRMWPHMFD IGPPRELTDD AFGGGDDDAM  300
ALRILNAITP IPRFLHFTLN ERLLREFEGH ERVHVIDFDI KQGLQWPGLL QSLAARAVPP  360
AHVRITGVGE SRQELQETGA RLARVAAALG LAFEFHAVVD RLEDVRLWML HVKRGECVAV  420
NCVLAMHRLL RDDAALTDFL GLARSTGATI LLLGEHEGGG LNSGRWEARF ARALRYYAAA  480
FDAVDAAGLP EASPARAKAE EMFAREIRNA VAFEGPERFE RHESFAGWRR RMEDGGGFKN  540
AGIGEREAMQ GRMIARMFGP DKYTVQAHGG GGSGGGEALT LRWLDQPLYT VTAWTPAGDG  600
AGGSTVSAST TASHSQQS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A2e-5722459626380Protein SCARECROW
5b3h_A2e-5722459625379Protein SCARECROW
5b3h_D2e-5722459625379Protein SCARECROW
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.891100.0callus| flower| panicle
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO1154661350.0
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in the shoot apical meristem (SAM) and elongating cells of young seedlings. Expressed in leaf joints, culms, internodes, stems, young panicles, primary roots and lateral roots. {ECO:0000269|PubMed:19220793}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that acts as positivie regulator of brassinosteroid (BR) signaling (PubMed:19220793, PubMed:22685166). Functions downstream of BRI1 and GSK2 to modulate BR responses. Acts as a direct target of GSK2 kinase to mediate BR responses (PubMed:22685166). Involved in feedback inhibition of BR biosynthetic genes. Repressed by BZR1 (PubMed:19220793). {ECO:0000269|PubMed:19220793, ECO:0000269|PubMed:22685166}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Down-regulated by 24-epibrassinolide. {ECO:0000269|PubMed:19220793}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126140.0CP012614.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 6 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025881992.10.0protein DWARF AND LOW-TILLERING-like
SwissprotQ9LWU90.0DLT_ORYSJ; Protein DWARF AND LOW-TILLERING
TrEMBLA2Y8T00.0A2Y8T0_ORYSI; Uncharacterized protein
STRINGORUFI06G01590.10.0(Oryza rufipogon)
STRINGOS06T0127800-010.0(Oryza sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP64043455
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G63100.11e-113GRAS family protein
Publications ? help Back to Top
  1. Tong H,Chu C
    Roles of DLT in fine modulation on brassinosteroid response in rice.
    Plant Signal Behav, 2009. 4(5): p. 438-9
    [PMID:19816111]
  2. Li W, et al.
    Identification and characterization of dwarf 62, a loss-of-function mutation in DLT/OsGRAS-32 affecting gibberellin metabolism in rice.
    Planta, 2010. 232(6): p. 1383-96
    [PMID:20830595]
  3. Tong H, et al.
    DWARF AND LOW-TILLERING acts as a direct downstream target of a GSK3/SHAGGY-like kinase to mediate brassinosteroid responses in rice.
    Plant Cell, 2012. 24(6): p. 2562-77
    [PMID:22685166]
  4. Zhang C,Bai MY,Chong K
    Brassinosteroid-mediated regulation of agronomic traits in rice.
    Plant Cell Rep., 2014. 33(5): p. 683-96
    [PMID:24667992]
  5. Yang C,Shen W,He Y,Tian Z,Li J
    OVATE Family Protein 8 Positively Mediates Brassinosteroid Signaling through Interacting with the GSK3-like Kinase in Rice.
    PLoS Genet., 2016. 12(6): p. e1006118
    [PMID:27332964]